LOCUS BC053853 1252 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens phytanoyl-CoA dioxygenase domain containing 1, mRNA
(cDNA clone MGC:61786 IMAGE:5209351), complete cds.
ACCESSION BC053853
VERSION BC053853.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1252)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1252)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: d Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222242.
FEATURES Location/Qualifiers
source 1..1252
/db_xref="H-InvDB:HIT000053992"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61786 IMAGE:5209351"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1252
/gene="PHYHD1"
/gene_synonym="MGC16638"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
CDS 3..878
/gene="PHYHD1"
/gene_synonym="MGC16638"
/codon_start=1
/product="PHYHD1 protein"
/protein_id="AAH53853.1"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
/translation="MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMD
VPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINK
IGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDAS
FLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGS
EPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPEN
WLQPTAELPFPQLYT"
BASE COUNT 296 a 369 c 319 g 268 t
ORIGIN
1 ccatggcctg cctgagcccc tcgcagctcc agaagttcca acaggatgga ttcctggtgc
61 tggaaggatt cttgtctgcg gaagagtgtg tggccatgca acaaaggatt ggcgagatag
121 tggctgaaat ggatgttcct ctccactgcc gcacagaatt ctccacccag gaagaggagc
181 agcttcgagc ccagggcagc acagactatt tcttgagcag tggtgacaag attcgattct
241 tctttgagaa aggcgttttt gatgagaaag gaaatttcct ggtccctccg gagaaatcca
301 tcaacaaaat tggccacgct ctgcacgccc atgaccccgt cttcaagagc atcacacact
361 ccttcaaggt gcagaccttg gccagaagtc tgggcctcca gatgcccgtg gtggtgcaga
421 gcatgtacat ctttaagcaa cctcactttg gcggtgaagt ctcccctcat caggacgcct
481 ccttcctgta cacggagccc ctgggccggg tgctgggcgt gtggatcgca gtggaggatg
541 ccacgctgga gaacggctgt ctctggttca tccctggctc ccacaccagt ggtgtgtcaa
601 gaaggatggt ccgggcccct gttggctcag cgcctggtac cagcttcctt gggtcagagc
661 cagcccggga taacagcctc tttgtgccca ccccagtgca gagaggggcc ctggttctca
721 tccatggaga agtggtacac aagagcaagc agaacctctc tgaccgctcg cgccaggcct
781 acactttcca cctcatggag gcctctggca ccacctggag cccggagaac tggctccagc
841 caacagctga actgcccttt ccccaactgt acacctaaag gctctcgcag ggcaggagcc
901 ctcgcccctc ccgggtgaag ctgtgggctg taaacaccag tgccttgctc agcctcctgg
961 ttgcaacagg gaggtcttgt ctcccctcct gggctttcct cctgccctgt gggcagcagc
1021 ctaggctggg tcaggggctt ccctaagatc ttcacctctc tgcctcccta ctgccccaac
1081 atagccttga ggaggcttct cagccaccaa agggttctgg ccccttctca ctctcctctc
1141 ctctcagatg gaactctggt tattatggtg ttagttatcg aataaaaacg acttcagaat
1201 gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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