LOCUS BC053541 1530 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Rab9 effector protein with kelch motifs, mRNA (cDNA
clone MGC:61458 IMAGE:5724458), complete cds.
ACCESSION BC053541
VERSION BC053541.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1530)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1530)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33695108.
FEATURES Location/Qualifiers
source 1..1530
/db_xref="H-InvDB:HIT000053907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61458 IMAGE:5724458"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1530
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/db_xref="GeneID:10244"
/db_xref="HGNC:HGNC:16896"
/db_xref="MIM:605962"
CDS 140..1258
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/codon_start=1
/product="Rab9 effector protein with kelch motifs"
/protein_id="AAH53541.1"
/db_xref="GeneID:10244"
/db_xref="HGNC:HGNC:16896"
/db_xref="MIM:605962"
/translation="MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGN
AKRGKVFIVGGANPNRSFSDVHTMDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIW
VFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGER
GAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYD
DLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTE
EQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMS
HSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVVD"
BASE COUNT 474 a 359 c 357 g 340 t
ORIGIN
1 ccgcagaact gccacgtggg gatgagattt gctgggctgg tagcggcggc tgctgcggga
61 ggtcccgccc acgtgaagcc agcctaactg agctctggac tttggggaca gctgtcagtg
121 gcctaggccg caggacacca tgaagcaact gccagtcttg gaacctggag acaagcccag
181 gaaagcaaca tggtacacct tgactgtccc tggagacagc ccctgtgctc gagttggcca
241 cagctgttca tatttacccc cagttggtaa tgccaagaga gggaaggtct tcattgttgg
301 gggagcaaat ccaaacagaa gcttctcaga cgtgcacacc atggatctgg gaaaacacca
361 gtgggactta gatacctgca agggcctctt gccccggtat gaacatgcta gcttcattcc
421 ctcctgcaca cctgaccgta tctgggtatt tggaggtgcc aaccaatcag gaaatcgaaa
481 ttgtctacaa gtcctgaatc ctgaaaccag gacgtggacc acgccagaag tgaccagccc
541 cccaccatcc ccaagaacat tccacacatc atcggcagcc attggaaacc agctatatgt
601 ctttgggggc ggagagagag gtgcccagcc cgtgcaggac acgaagctgc atgtgtttga
661 cgcaaacact ctgacctggt cacagccaga gacacttgga aatcctccat ctccccggca
721 tggtcatgtg atggtggcag cagggacaaa gctcttcatc cacggaggct tggcggggga
781 cagattctat gatgacctcc actgcattga tataagtgac atgaaatggc agaagctaaa
841 tcccactggg gctgctccag caggctgtgc tgcccactca gctgtggcca tgggaaaaca
901 tgtgtacatc tttggtggaa tgactcctgc aggagcactg gacacaatgt accagtatca
961 cacagaagag cagcattgga ccttgcttaa atttgatact cttctacccc ctggacgatt
1021 ggaccattcc atgtgtatca ttccatggcc agtgacgtgt gcttctgaga aagaagattc
1081 caactctctc actctgaacc atgaagctga gaaagaggat tcagctgaca aagtaatgag
1141 ccacagtggt gactcacatg aggaaagcca gactgctaca ctgctctgtt tggtgtttgg
1201 tgggatgaat acagaagggg aaatctatga cgattgtatt gtgactgtag tggactaata
1261 aaacccacat ttttattacc tgtcagttac tttcagaata gttaagtaaa acattagctg
1321 ttttatacct ccaaaatatc ttctgcatta tatatctgtt tttctcctac tttggtaggt
1381 gaagaaacta atgcaaataa ttcttatgtg cactaaacct tgctatattg cctctcaaaa
1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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