LOCUS BC052973 4339 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens protocadherin 12, mRNA (cDNA clone MGC:57546
IMAGE:5174442), complete cds.
ACCESSION BC052973
VERSION BC052973.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4339)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4339)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14589925.
FEATURES Location/Qualifiers
source 1..4339
/db_xref="H-InvDB:HIT000053846"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57546 IMAGE:5174442"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4339
/gene="PCDH12"
/gene_synonym="VE-cadherin-2"
/gene_synonym="VECAD2"
/db_xref="GeneID:51294"
/db_xref="HGNC:HGNC:8657"
/db_xref="MIM:605622"
CDS 319..3882
/gene="PCDH12"
/gene_synonym="VE-cadherin-2"
/gene_synonym="VECAD2"
/codon_start=1
/product="PCDH12 protein"
/protein_id="AAH52973.1"
/db_xref="GeneID:51294"
/db_xref="HGNC:HGNC:8657"
/db_xref="MIM:605622"
/translation="MMQLLQLLLGLLGPGGYLFLLGDCQEVTTLTVKYQVSEEVPSGT
VIGKLSQELGREERRRQAGAAFQVLQLPQALPIQVDSEEGLLSTGRRLDREQLCRQWD
PCLVSFDVLATGDLALIHVEIQVLDINDHQPRFPKGEQELEISESASLRTRIPLDRAL
DPDTGPNTLHTYTLSPSEHFALDVIVGPDETKHAELIVVKELDREIHSFFDLVLTAYD
NGNPPKSGTSLVKVNVLDSNDNSPAFAESSLALEIQEDAAPGTLLIKLTATDPDQGPN
GEVEFFLSKHMPPEVLDTFSIDAKTGQVILRRPLDYEKNPAYEVDVQARDLGPNPIPA
HCKVLIKVLDVNDNIPSIHVTWASQPSLVSEALPKDSFIALVMADDLDSGNNGLVHCW
LSQELGHFRLKRTNGNTYMLLTNATLDREQWPKYTLTLLAQDQGLQPLSAKKQLSIQI
SDINDNAPVFEKSRYEVSTRENNLPSLHLITIKAHDADLGINGKVSYRIQDSPVAHLV
AIDSNTGEVTAQRSLNYEEMAGFEFQVIAEDSGQPMLASSVSVWVSLLDANDNAPEVV
QPVLSDGKASLSVLVNASTGHLLVPIETPNGLGPAGTDTPPLATHSSRPFLLTTIVAR
DADSGANGEPLYSIRSGNEAHLFILNPHTGQLFVNVTNASSLIGSEWELEIVVEDQGS
PPLQTRALLRVMFVTSVDHLRDSARKPGALSMSMLTVICLAVLLGIFGLILALFMSIC
RTEKKDNRAYNCREAESTYRQQPKRPQKHIQKADIHLVPVLRGQAGEPCEVGQSHKDV
DKEAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGAPAESREVLQDTVNLLFNHPRQR
NASRENLNLPEPQPATGQPRSRPLKVAGSPTGRLAGDQGSEEAPQRPPASSATLRRQR
HLNGKVSPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLHQG
QFQPKPNHRGNKYLAKPGGSRSAIPDTDGPSARAGGQTDPEQEEGPLDPEEDLSVKQL
LEEELSSLLDPSTGLALDRLSAPDPAWMARLSLPLTTNYRDNVISPDAAATEEPRTFQ
TFGKAEAPELSPTGTRLASTFVSEMSSLLEMLLEQRSSMPVEAASEALRRLSVCGRTL
SLDLATSAASGMKVQGDPGGKTGTEGKSRGSSSSSSSSRCL"
BASE COUNT 1066 a 1219 c 1206 g 848 t
ORIGIN
1 ctgctcaact gggtcaggtc cctcttagac cagctcttgt ccatcatttg ctgaagtgga
61 ccaactagtt ccccagtagg gggtctcccc tggcaattct tgatcggcgt ttggacatct
121 cagatcgctt ccaatgaaga tggccttgcc ttggggtcct gcttgtttca taatcatcta
181 actatgggac aaggttgtgc cggcagctct gggggaagga gcacggggct gatcaagcca
241 tccaggaaac actggaggac ttgtccagcc ttgaaagaac tctagtggtt tctgaatcta
301 gcccacttgg cggtaagcat gatgcaactt ctgcaacttc tgctggggct tttggggcca
361 ggtggctact tatttctttt aggggattgt caggaggtga ccactctcac ggtgaaatac
421 caagtgtcag aggaagtgcc atctggtaca gtgatcggga agctgtccca ggaactgggc
481 cgggaggaga ggcggaggca agctggggcc gccttccagg tgttgcagct gcctcaggcg
541 ctccccattc aggtggactc tgaggaaggc ttgctcagca caggcaggcg gctggatcga
601 gagcagctat gccgacagtg ggatccctgc ctggtttcct ttgatgtgct tgccacaggg
661 gatttggctc tgatccatgt ggagatccaa gtgctggaca tcaatgacca ccagccacgg
721 tttcccaaag gcgagcagga gctggaaatc tctgagagcg cctctctgcg aacccggatc
781 cccctggaca gagctcttga cccagacaca ggccctaaca ccctgcacac ctacactctg
841 tctcccagtg agcactttgc cttggatgtc attgtgggcc ctgatgagac caaacatgca
901 gaactcatag tggtgaagga gctggacagg gaaatccatt cattttttga tctggtgtta
961 actgcctatg acaatgggaa cccccccaag tcaggtacca gcttggtcaa ggtcaacgtc
1021 ttggactcca atgacaatag ccctgcgttt gctgagagtt cactggcact ggaaatccaa
1081 gaagatgctg cacctggtac gcttctcata aaactgaccg ccacagaccc tgaccaaggc
1141 cccaatgggg aggtggagtt cttcctcagt aagcacatgc ctccagaggt gctggacacc
1201 ttcagtattg atgccaagac aggccaggtc attctgcgtc gacctctaga ctatgaaaag
1261 aaccctgcct acgaggtgga tgttcaggca agggacctgg gtcccaatcc tatcccagcc
1321 cattgcaaag ttctcatcaa ggttctggat gtcaatgaca acatcccaag catccacgtc
1381 acatgggcct cccagccatc actggtgtca gaagctcttc ccaaggacag ttttattgct
1441 cttgtcatgg cagatgactt ggattcagga aacaatggtt tggtccactg ctggctgagc
1501 caagagctgg gccacttcag gctgaaaaga actaatggca acacatacat gttgctaacc
1561 aatgccacac tggacagaga gcagtggccc aaatataccc tcactctgtt agcccaagac
1621 caaggactcc agcccttatc agccaagaaa cagctcagca ttcagatcag tgacatcaac
1681 gacaatgcac ctgtgtttga gaaaagcagg tatgaagtct ccacgcggga aaacaactta
1741 ccctctcttc acctcattac catcaaggct catgatgcag acttgggcat taatggaaaa
1801 gtctcatacc gcatccagga ctccccagtt gctcacttag tagctattga ctccaacaca
1861 ggagaggtca ctgctcagag gtcactgaac tatgaagaga tggccggctt tgagttccag
1921 gtgatcgcag aggacagcgg gcaacccatg cttgcatcca gtgtctctgt gtgggtcagc
1981 ctcttggatg ccaatgataa tgccccagag gtggtccagc ctgtgctcag cgatggaaaa
2041 gccagcctct ccgtgcttgt gaatgcctcc acaggccacc tgctggtgcc catcgagact
2101 cccaatggct tgggcccagc gggcactgac acacctccac tggccactca cagctcccgg
2161 ccattccttt tgacaaccat tgtggcaaga gatgcagact cgggggcaaa tggagagccc
2221 ctctacagca tccgcagtgg aaatgaagcc cacctcttca tcctcaaccc tcatacgggg
2281 cagctgttcg tcaatgtcac caatgccagc agcctcattg ggagtgagtg ggagctggag
2341 atagtagtag aggaccaggg aagccccccc ttacagaccc gagccctgtt gagggtcatg
2401 tttgtcacca gtgtggacca cctgagggac tcagcccgca agcctggggc tttgagcatg
2461 tcgatgctga cggtgatctg cctggctgta ctgctgggca tcttcgggtt gatcctggct
2521 ttgttcatgt ccatctgccg gacagaaaag aaggacaaca gggcctacaa ctgtcgggag
2581 gccgagtcca cctaccgcca gcagcccaag aggccccaga aacacattca gaaggcagac
2641 atccacctcg tgcctgtgct caggggtcag gcaggtgagc cttgtgaagt cgggcagtcc
2701 cacaaagatg tggacaagga ggcgatgatg gaagcaggct gggacccctg cctgcaggcc
2761 cccttccacc tcaccccgac cctgtacagg acgctgcgta atcaaggcaa ccagggagca
2821 ccggcggaga gccgagaggt gctgcaagac acggtcaacc tccttttcaa ccatcccagg
2881 cagaggaatg cctcccggga gaacctgaac cttcccgagc cccagcctgc cacaggccag
2941 ccacgttcca ggcctctgaa ggttgcaggc agccccacag ggaggctggc tggagaccag
3001 ggcagtgagg aagccccaca gaggccacca gcctcctctg caaccctgag acggcagcga
3061 catctcaatg gcaaagtgtc ccctgagaaa gaatcagggc cccgtcagat cctgcggagc
3121 ctggtccggc tgtctgtggc tgccttcgcc gagcggaacc ccgtggagga gctcactgtg
3181 gattctcctc ctgttcagca aatctcccag ctgctgtcct tgctgcatca gggccaattc
3241 cagcccaaac caaaccaccg aggaaataag tacttggcca agccaggagg cagcaggagt
3301 gcaatcccag acacagatgg cccaagtgca agggctggag gccagacaga cccagaacag
3361 gaggaagggc ctttggatcc tgaagaggac ctctctgtga agcaactgct agaagaagag
3421 ctgtcaagtc tgctggaccc cagcacaggt ctggccctgg accggctgag cgcccctgac
3481 ccggcctgga tggcgagact ctctttgccc ctcaccacca actaccgtga caatgtgatc
3541 tccccggatg ctgcagccac ggaggagccg aggaccttcc agacgttcgg caaggcagag
3601 gcaccagagc tgagcccaac aggcacgagg ctggccagca cctttgtctc ggagatgagc
3661 tcactgctgg agatgctgct ggaacagcgc tccagcatgc ccgtggaggc cgcctccgag
3721 gcgctgcggc ggctctcggt ctgcgggagg accctcagtt tagacttggc caccagtgca
3781 gcctcaggca tgaaagtgca aggggaccca ggtggaaaga cggggactga gggcaagagc
3841 agaggcagca gcagcagcag cagcagcagc aggtgcctgt gaacatacct cagacgcctc
3901 tggatccaag aaccaggggc ctgaggatct gtggacaaga gctggtttct aaaatcttgt
3961 aactcactag ctagcggcgg cctgagaact ttagggtgac tgatgctacc cccacagagg
4021 aggcaagagc cccaggacta acagctgact gaccaaagca gccccttgta agcagctctg
4081 agtcttttgg aggacaggga cggtttgtgg ctgagataag tgtttcctgg caaaacatat
4141 gtggagcaca aagggtcagt cctctggcag aacagatgcc acggagtatc acaggcagga
4201 aaggatggcc ttcttgggta gcaggagtca gggggctgta ccctgggggt gccaggaaat
4261 gctctctgac ctatcaataa aggaaaagca gtgattcaaa aaaaaaaaaa aaaaaaaaaa
4321 aaaaaaaaaa aaaaaaaaa
//