LOCUS BC052643 1147 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens ubiquitination factor E4A (UFD2 homolog, yeast), mRNA
(cDNA clone IMAGE:6163275), partial cds.
ACCESSION BC052643
VERSION BC052643.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1147)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1147)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: m Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38327028.
FEATURES Location/Qualifiers
source 1..1147
/db_xref="H-InvDB:HIT000259208"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6163275"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1147
/gene="UBE4A"
/gene_synonym="E4"
/gene_synonym="UBOX2"
/gene_synonym="UFD2"
/db_xref="GeneID:9354"
/db_xref="HGNC:HGNC:12499"
/db_xref="MIM:603753"
CDS 94..>1147
/gene="UBE4A"
/gene_synonym="E4"
/gene_synonym="UBOX2"
/gene_synonym="UFD2"
/codon_start=1
/product="UBE4A protein"
/protein_id="AAH52643.1"
/db_xref="GeneID:9354"
/db_xref="HGNC:HGNC:12499"
/db_xref="MIM:603753"
/translation="MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELP
ASPDDSDNSVSESLDEFDYSVAEISRSFRSQQEICEQLNINHMIQRIFLITLDNSDPS
LKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQALFARLLLQDPGNHLINMTSSTTL
NLSADRDAGERHIFCYLYSCFQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPE
IYVDQNIHEQLVDLMLEAIQGAHFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDIL
LGRIKDLELCQILLYAYLDILLYFTRQKDMAKVFVEYIQPKDPTNGQMYQKTLLGVIL
SISCLLKTPGVVEKKKK"
BASE COUNT 334 a 257 c 252 g 304 t
ORIGIN
1 cttcggccgc tgagattctg tcgtgtcgtc gctgctggca cttcaggctc tgcctctccc
61 actaggtctg gatggaggat accttaaagt gaaatgacag accaggagaa taacaacaac
121 atctcaagta acccctttgc tgctcttttt ggctccctgg ctgatgccaa acagtttgcg
181 gcaatccaaa aagagcagct gaagcaacaa tctgatgaac tcccagctag cccagatgac
241 tcggataata gcgtgtcaga gagcctggat gaattcgatt actctgtggc tgagattagc
301 cgctcattcc gatcacagca ggaaatatgt gagcaactca acatcaatca catgatccaa
361 aggatcttcc ttattactct ggacaacagt gatcccagct tgaaaagcgg gaatggcatc
421 cctagccgtt gtgtgtattt ggaagaaatg gcagtagagc tagaagatca agactggctt
481 gatatgagca atgttgagca ggccctcttc gctcgcttat tacttcaaga tccaggcaac
541 cacttaatta acatgacttc ttctacaacg ctaaatctct ctgctgatcg agatgcagga
601 gagaggcaca ttttttgtta cctttactcc tgcttccaga gagccaagga agagattacc
661 aaagttccag agaacctgct accctttgca gtgcagtgca gaaacctcac tgtgtccaat
721 acccgaacag ttcttctcac cccagagatc tatgttgacc aaaacatcca tgagcaactg
781 gtagatttga tgttagaagc catccaggga gcccattttg aagatgtaac tgagtttctg
841 gaagaggtca ttgaagcctt gatattggat gaggaagtta gaacatttcc agaagtcatg
901 attccagtgt ttgatatttt attgggccga ataaaagatc tagagctctg tcagatcctt
961 ttgtatgcat atctggatat tcttctctat ttcactaggc aaaaagatat ggcaaaggtt
1021 tttgtagaat acattcagcc caaggaccct accaatgggc aaatgtacca gaagaccttg
1081 ctgggagtaa ttctgagtat ctcctgctta ttaaagactc cgggtgttgt agaaaaaaaa
1141 aaaaaaa
//