LOCUS BC052624 1308 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 4, mRNA (cDNA clone
IMAGE:6574134), partial cds.
ACCESSION BC052624
VERSION BC052624.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1308)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1308)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51173872.
FEATURES Location/Qualifiers
source 1..1308
/db_xref="H-InvDB:HIT000259206"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6574134"
/tissue_type="Prostate, carcinoma"
/clone_lib="NIH_MGC_40"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1308
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
CDS 129..>1308
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/codon_start=1
/product="HMGXB4 protein"
/protein_id="AAH52624.1"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
/translation="MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREE
EEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSS
PQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELP
LEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQA
TVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAE
SHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKH
KEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKK
K"
BASE COUNT 416 a 298 c 331 g 263 t
ORIGIN
1 cttctccaag atggcggcga tcggcggcgt tgaggcggga tccgggcgag ccgagtgaag
61 acctggtcct gtagacggga aggagcctgg acacagtgac acattctcaa aggccctgca
121 ggaccaccat ggcttatgat gactccgtga agaaagaaga ttgttttgat ggtgatcata
181 cctttgagga cataggactt gcagctggcc gaagccaacg agagaaaaaa cgttcttaca
241 aagatttttt aagggaagag gaagaaattg ctgctcaggt caggaattct tccaagaaga
301 agttgaagga tagtgaactt tacttcttgg ggacggacac acacaagaag aagaggaagc
361 actcctctga tgattactac tatggagata tttcgtcttt ggaatcgtca cagaagaaaa
421 agaaaaagtc cagcccacag tctactgata cagctatgga cctgttgaaa gctatcactt
481 ccccactggc agcaggctcc aagccctcca aaaagactgg ggagaaatcc tctggctctt
541 caagccattc ggagagtaaa aaggagcacc acaggaagaa agtcagtgga agcagtgggg
601 aactacccct agaggatggt ggctcccaca aatcgaaaaa aatgaaacct ctctatgtga
661 acacagagac actgaccctt cgggagcctg atggtttaaa aatgaaactt attctgtcac
721 caaaggagaa gggaagcagc tctgttgatg aggagtcttt tcaatatccc tcccaacaag
781 cgactgtgaa aaaatcctca aagaaatcag ctcgggatga gcagggtgct ttactcctag
841 gacatgagtt acagagcttt ctgaaaacag cccggaaaaa gcacaagtca tcctcagacg
901 cacattcatc tcctggccct gaaggctgtg ggtctgacgc ctcccagttc gcagagtccc
961 acagtgctaa ccttgatctt tcagggcttg aacctattct ggtagaatca gactcatcct
1021 ctggtgggga actagaggct ggggagttag tgatagatga ttcttaccga gaaatcaaga
1081 agaaaaagaa gtcaaagaag agcaaaaaga agaaagacaa ggagaagcat aaagagaagc
1141 gacactccaa gtccaagaga agtttaggac tttctgccgt gccagtggga gaggtcacag
1201 tgacatctgg ccctcctccc agcatcccat acgctggagc agcagcacct cccctgccac
1261 ttcctggcct ccacacagat gggcatagtg aaaaaaaaaa aaaaaaaa
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