LOCUS BC052611 2080 bp mRNA linear HUM 16-AUG-2008
DEFINITION Homo sapiens paxillin, mRNA (cDNA clone IMAGE:6252827), complete
cds.
ACCESSION BC052611
VERSION BC052611.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2080)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2080)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: h Column: 24
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2080
/db_xref="H-InvDB:HIT000053815"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6252827"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2080
/gene="PXN"
/db_xref="GeneID:5829"
/db_xref="HGNC:HGNC:9718"
/db_xref="MIM:602505"
CDS 264..1052
/gene="PXN"
/codon_start=1
/product="PXN protein"
/protein_id="AAH52611.1"
/db_xref="GeneID:5829"
/db_xref="HGNC:HGNC:9718"
/db_xref="MIM:602505"
/translation="MPDTFNSRSPSVEGSLWAVGTESQGRDWRHLPTITSELSGAPRC
HTVPCAGSTALQEPGEPQGPPASPSCPEEALAATWEQPWASEVFGPERMPPSGAARSF
QEVTEPAVVAVDRQAIFPDTWTLTEEHGLQQERPRPEPGRLGSSSPASVTTEQLGAKM
TERGSVARPTQGPETPRSPEGTTEAATQDGKEQPELPCAMAMGTPSTTERISTSGQAG
TSSHGCWAWPLAGLSVGRSSLTACSLPLCACLLGQKMLRHCGRT"
BASE COUNT 499 a 593 c 556 g 432 t
ORIGIN
1 cccctctgca tttctctctt ctccagacca gctcctccac tgtggctctg agtgccccgg
61 ggctgtccag ctctgctccg tcctcatact gctcccttcc tccttctcct cctcccatgc
121 catctgtatt tctgccaccc accactatac cctcccctcg aggccagggc cacactccgg
181 agttcccttg tactgagcag agtggacgag gccttctacc tcctgtagcc cccagctggc
241 ttgatttggc tggtcttggg gtgatgcctg acaccttcaa ctcaaggtct ccctctgtgg
301 agggttctct gtgggcagtg ggcacagaga gtcagggtcg agattggagg cacctgccga
361 ccatcacaag tgagctctct ggggctcccc gctgccacac tgtaccctgt gctgggagca
421 cagctctcca agagcctggg gagccccagg ggccaccagc cagcccttcg tgcccagagg
481 aggccttggc tgccacatgg gagcagccat gggcttcgga ggtattcggg cctgagagaa
541 tgcccccctc tggagctgct cgaagcttcc aagaagtaac agagccagct gtagtggcag
601 tggaccggca ggccatcttc ccagatacct ggactctcac ggaggaacat ggcctacagc
661 aggagaggcc aaggccagag ccagggaggc tgggaagcag ctcccctgcc tcagttacca
721 cggagcagct aggtgcaaag atgaccgaga ggggaagtgt ggccaggcca acccagggac
781 ctgaaacccc aaggagccca gagggcacca cggaagctgc cacccaggac gggaaggaac
841 agccagagct tccatgtgcc atggccatgg gcacacccag caccacggag aggatttcca
901 cctctggcca ggcaggcacc agctcgcatg gctgctgggc atggccattg gcgggtctga
961 gtgtgggccg ctcctcgcta actgcatgca gcctcccact ctgcgcatgt ctgcttgggc
1021 agaaaatgct gagacactgt ggccggacct gacagtcagc acttggcagt gggctctgtg
1081 gacccagcat ttctcatagc gtcaacccac ctcttgcctt gttgaggctt tttcctttca
1141 gatgagctgt ccttgacatt ctgatgtggt gaaatggtta gcagcatgga ctttggaacc
1201 agatagacct agatacaaac cacatgtcta acacttgcta cctctgtgac cttgggcaac
1261 cccctccctc agcctcagtt ttctcatctg taaagtgggg agaatttcca tcaagattgt
1321 ccggagacct aaatgagata attcctggaa agtgtttaga acacagcatg tggtccctca
1381 ataggccgtg gctgacagta cttttattac ttgctttttg cttaaattaa aactttatgc
1441 cgggccaggt gtggtggctc acgcctgtaa tcccagcact ttgggaggcc gaggcgggcg
1501 gatcacctga ggttgggagt tcgaggccag cctgaccaac atggagaaac cccatctcta
1561 ctaaagatac aaaaagatta gctgggcatg gtggcgcatg cctgtaatcc cagctactca
1621 ggaggctgag gcaggagaat cacttgaacc caggacgcag aggttgcggt gagccaagat
1681 cataccattg cactccagcc tgggcaacaa gagtgaaact tggtctcaaa aaacaaaaac
1741 aaaacaacaa caacaacaaa aaactttatg cctcaccctg gcacagtagc ttatacctgt
1801 aatcctagca ctttgggagg ctgaggcaag aggatcgctt gagcccagga gtttgagacc
1861 agcctaggca acacagtgaa accctgtctc tacaaaaaat taaagattag ctgggcgtgg
1921 ttgcacatgc ctatagtccc agctgctggg gaggctaaag caggaggatg gctttagccc
1981 aggagtttga ggctgcagtg agttgtgatc gcaccactgc attcagcctg agcaacagat
2041 caagacactg tctcaaaaaa aaaaaaaaaa aaaaaaaaaa
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