LOCUS BC052585 2242 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens podocalyxin-like 2, mRNA (cDNA clone MGC:59786
IMAGE:6264322), complete cds.
ACCESSION BC052585
VERSION BC052585.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2242)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2242)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: h Column: 7.
FEATURES Location/Qualifiers
source 1..2242
/db_xref="H-InvDB:HIT000053802"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59786 IMAGE:6264322"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2242
/gene="PODXL2"
/gene_synonym="PODLX2"
/db_xref="GeneID:50512"
/db_xref="HGNC:HGNC:17936"
CDS 17..1834
/gene="PODXL2"
/gene_synonym="PODLX2"
/codon_start=1
/product="podocalyxin-like 2"
/protein_id="AAH52585.1"
/db_xref="GeneID:50512"
/db_xref="HGNC:HGNC:17936"
/translation="MGRLLRAARLPPLLSPLLLLLVGGAFLGACVAGSDEPGPEGLTS
TSLLDLLLPTGLEPLDSEEPSETMGLGAGLGAPGSGFPSEENEESRILQPPQYFWEEE
EELNDSSLDLGPTADYVFPDLTEKAGSIEDTSQAQELPNLPSPLPKMNLVEPPWHMPP
REEEEEEEEEEEREKEEVEKQEEEEEEELLPVNGSQEEAKPQVRDFSLTSSSQTPGAT
KSRHEDSGDQASSGVEVESSMGPSLLLPSVTPTTVTPGDQDSTSQEAEATVLPAAGLG
VEFEAPQEASEEATAGAAGLSGQHEEVPALPSFPQTTAPSGAEHPDEDPLGSRTSASS
PLAPGDMELTPSSATLGQEDLNQQLLEGQAAEAQSRIPWDSTQVICKDWSNLAGKNYI
ILNMTENIDCEVFRQHRGPQLLALVEEVLPRHGSGHHGAWHISLSKPSEKEQHLLMTL
VGEQGVVPTQDVLSMLGDIRRSLEEIGIQNYSTTSSCQARASQVRSDYGTLFVVLVVI
GAICIIIIALGLLYNCWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVASDSQSEMQE
KHPSLNGGGALNGPGSWGALMGGKRDPEDSDVFEEDTHL"
BASE COUNT 521 a 691 c 691 g 339 t
ORIGIN
1 cggcgacggc tacaccatgg gccggctgct gcgggccgcc cggctgccgc cgctgctttc
61 gccgctgctg cttctgctgg ttgggggagc gttcctgggt gcctgtgtgg ctgggtctga
121 tgagcctggc ccagagggcc tcacctccac ctccctgcta gacctcctgc tgcccactgg
181 cttggagcca ctggactcag aggagcctag tgagaccatg ggcctgggag ctgggctggg
241 agcccctggc tcaggcttcc ccagcgaaga gaatgaagag tctcggattc tgcagccacc
301 acagtacttc tgggaagagg aggaagagct gaatgactca agtctggacc tgggacccac
361 tgcagattat gtttttcctg acttaactga gaaggcaggt tccattgaag acactagcca
421 ggctcaagag ctgccaaacc tcccctctcc cttgcccaag atgaatctgg ttgagcctcc
481 ctggcatatg cctcccagag aggaggaaga agaggaagag gaagaggagg agagggagaa
541 ggaagaggta gagaaacaag aggaggagga agaggaggag ctgctccctg tgaatggatc
601 ccaagaagaa gccaagcctc aggtccgtga cttttctctc accagcagca gccagacccc
661 aggggccacc aaaagcaggc atgaagactc cggggaccag gcctcatcag gtgtggaggt
721 ggagagcagc atggggccca gcttgctgct gccttcagtc accccaacta cagtgactcc
781 gggggaccag gactccacca gccaagaggc agaggccaca gtgctgccag ctgcagggct
841 tggggtagag ttcgaggctc ctcaggaagc aagcgaggaa gccactgcag gagcagctgg
901 tttgtctggc cagcacgagg aggtgccggc cttgccttca ttccctcaaa ccacagctcc
961 cagtggggcc gagcacccag atgaagatcc ccttggctct agaacctcag cctcttcccc
1021 actggcccct ggagacatgg aactgacacc ttcctctgct accttgggac aagaagatct
1081 caaccagcag ctcctagaag ggcaggcagc tgaagctcaa tccaggatac cctgggattc
1141 tacgcaggtg atctgcaagg actggagcaa tctggctggg aaaaactaca tcattctgaa
1201 catgacagag aacatagact gtgaggtgtt ccggcagcac cgggggccac agctcctggc
1261 cctggtggaa gaggtgctgc cccgccatgg cagtggccac catggggcct ggcacatctc
1321 tctgagcaag cccagcgaga aggagcagca ccttctcatg acactggtgg gcgagcaggg
1381 ggtggtgccc actcaagatg tcctttccat gctgggtgac atccgcagga gcctggagga
1441 gattggcatc cagaactatt ccacaaccag cagctgccag gcgcgggcca gccaggtgcg
1501 cagcgactac ggcacgctct tcgtggtgct ggtggtcatt ggggccatct gcatcatcat
1561 cattgcgctt ggcctgctct acaactgctg gcagcgccgg ctgcccaagc tcaagcacgt
1621 gtcgcacggc gaggagctgc gcttcgtgga gaacggctgc cacgacaacc ccacgctgga
1681 cgtggccagc gacagccagt cggagatgca ggagaagcac cccagcctga acggcggcgg
1741 ggccctcaac ggcccgggga gctggggggc gctcatgggg ggcaagcggg accccgagga
1801 ctcggacgtg ttcgaggagg acacgcacct gtgagcgcag ccgaggcgca ggccgagtgg
1861 gccgccagga ccaagcgagg tggaccccga aacggacggc ccggagcccg caccagcccc
1921 gcgcctaccc gggccgcccc cgcggcctgg ccctcggcgc gggctccttc ccgcttcccc
1981 cgacttcaca cggcggcttc ggaccaactc cctcactccc gcccgagggg caggcctcaa
2041 agcccgcctt ggccccgctt tcccgcccct gaaccccggc cccgcgggcg gcgggcggcg
2101 cttcctgcgc cccgggactc aattaaaccc gcccggagac cacgccgggc ccagcgcgtc
2161 tgcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aa
//