LOCUS BC052577 4426 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens phosphofurin acidic cluster sorting protein 1, mRNA
(cDNA clone MGC:59915 IMAGE:4130626), complete cds.
ACCESSION BC052577
VERSION BC052577.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4426)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4426)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: b Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30089915.
FEATURES Location/Qualifiers
source 1..4426
/db_xref="H-InvDB:HIT000053798"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59915 IMAGE:4130626"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4426
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/db_xref="GeneID:55690"
/db_xref="HGNC:HGNC:30032"
/db_xref="MIM:607492"
CDS 34..2925
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/codon_start=1
/product="phosphofurin acidic cluster sorting protein 1"
/protein_id="AAH52577.1"
/db_xref="GeneID:55690"
/db_xref="HGNC:HGNC:30032"
/db_xref="MIM:607492"
/translation="MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQPPPQQQQQQPPQQ
PTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMN
LYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIV
LPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINM
AEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDN
YSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKF
VALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESIL
STPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDTTSPMELAALEKIKSTWIKNQDD
SLTETDTLEITDQDMFGDASTSLVVPEKVKTPMKSSKTDLQGSASPSKVEGVHTPRQK
RSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENV
ILVNTTDWQGQYVAELLQDQRKPVVCTCSTVEVQAVLSALLTRIQRYCNCNSSMPRPV
KVAAVGGQSYLSSILRFFVKSLANKTSDWLGYMRFLIIPLGSHPVAKYLGSVDSKYSS
SFLDSGWRDLFSRSEPPVSEQLDVAGRVMQYVNGAATTHQLPVAEAMLTCRHKFPDED
SYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPS
SPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGERRREGDKRDASSKNTLKSVFRSV
QVSRLPHSGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLI
CSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKAT"
BASE COUNT 952 a 1434 c 1138 g 902 t
ORIGIN
1 cctcggcctc cgtaaccccc gcctagccgg gccatggcgg aacgcggagg ggcgggcggt
61 ggtcccggag gcgccggggg cggcagcggc cagcggggat ccggggtcgc ccagtcccct
121 cagcagccgc cgccgcagca gcagcagcag cagccgccgc agcagccgac gccccccaag
181 ctggcccagg ccacctcgtc gtcctcgtcc acctcggcgg cggctgcctc ctcctcgtcc
241 tcgtctacct ccacctccat ggccgtggcg gtggcctcgg gctccgcgcc tcccggtggc
301 ccggggccag gccgcacccc cgccccggtg cagatgaacc tgtacgccac ctgggaggtg
361 gaccggagct cgtccagctg cgtgcctagg ctattcagct tgaccctgaa gaaactcgtc
421 atgctaaaag aaatggacaa agatcttaac tcagtggtca tcgctgtgaa gctgcagggt
481 tcaaaaagaa ttcttcgctc caacgagatc gtccttccag ctagtggact ggtggaaaca
541 gagctccaat taaccttctc ccttcagtac cctcatttcc ttaagcgaga tgccaacaag
601 ctgcagatca tgctgcaaag gagaaaacgt tacaagaatc ggaccatctt gggctataag
661 accttggccg tgggactcat caacatggca gaggtgatgc agcatcctaa tgaaggcgca
721 ctggtgcttg gcctacacag caacgtgaag gatgtctctg tgcctgtggc agaaataaag
781 atctactccc tgtccagcca acccattgac catgaaggaa tcaaatccaa gctttctgat
841 cgttctcctg atattgacaa ttattctgag gaagaggaag agagtttctc atcagaacag
901 gaaggcagtg atgatccatt gcatgggcag gacttgttct acgaagacga agatctccgg
961 aaagtgaaga agacccggag gaaactaacc tcaacctctg ccatcacaag gcaacctaac
1021 atcaaacaga agtttgtggc cctcctgaag cggtttaaag tttcagatga ggtgggcttt
1081 gggctggagc atgtgtcccg cgagcagatc cgggaagtgg aagaggactt ggatgaattg
1141 tatgacagtc tggagatgta caaccccagc gacagtggcc ctgagatgga ggagacagaa
1201 agcatcctca gcacgccaaa gcccaagctc aagcctttct ttgaggggat gtcgcagtcc
1261 agctcccaga cggagattgg cagcctcaac agcaaaggca gcctcggaaa agacaccacc
1321 agccctatgg aattggctgc tctagaaaaa attaaatcta cttggattaa aaaccaagat
1381 gacagcttga ctgaaacaga cactctggaa atcactgacc aggacatgtt tggagatgcc
1441 agcacgagtc tggttgtgcc ggagaaagtc aaaactccca tgaagtccag taaaacggat
1501 ctccagggct ctgcctcccc cagcaaagtg gagggggtgc acacaccccg gcagaagagg
1561 agcacgcccc tgaaggagcg gcagctctcc aagcccctaa gtgagaggac caacagttcc
1621 gacagcgagc gctccccaga tctgggccac agcacgcaga ttccaagaaa ggtggtgtat
1681 gaccagctca atcagatcct ggtgtcagat gcagccctcc cagaaaatgt cattctggtg
1741 aacaccactg actggcaggg ccagtatgtg gctgagctgc tccaggacca gcggaagcct
1801 gtggtgtgca cctgctccac cgtggaggtc caggccgtgc tgtccgccct gctcacccgg
1861 atccagcgct actgcaactg caactcttcc atgccgaggc cagtgaaggt ggctgctgtg
1921 ggaggccaga gctacctgag ctccatcctc aggttctttg tcaagtccct ggccaacaag
1981 acctccgact ggcttggcta catgcgcttc ctcatcatcc ccctcggttc tcaccctgtg
2041 gccaaatact tggggtcagt cgacagtaaa tacagtagtt ccttcctgga ttctggttgg
2101 agagatctgt tcagtcgctc ggagccacca gtgtcagagc aactggacgt ggcagggcgg
2161 gtgatgcagt acgtcaacgg ggcagccacg acacaccagc ttcccgtggc cgaagccatg
2221 ctgacttgcc ggcataagtt ccctgatgaa gactcctatc agaagtttat tcccttcatt
2281 ggcgtggtga aggtgggtct ggttgaagac tctccctcca cagcaggcga tggggacgat
2341 tctcctgtgg tcagccttac tgtgccctcc acatcaccac cctccagctc gggcctgagc
2401 cgagacgcca cggccacccc tccctcctcc ccatctatga gcagcgccct ggccatcgtg
2461 gggagcccta atagcccata tggggacgtg attggcctcc aggtggacta ctggctgggc
2521 caccccgggg agcggaggag ggaaggcgac aagagggacg ccagctcgaa gaacaccctc
2581 aagagtgtct tccgctcagt gcaggtgtcc cgcctgcccc atagtgggga ggcccagctt
2641 tctggcacca tggccatgac tgtggtcacc aaagaaaaga acaagaaagt tcccaccatc
2701 ttcctgagca agaaaccccg agaaaaggag gtggattcta agagccaggt cattgaaggc
2761 atcagccgcc tcatctgctc agccaagcag cagcagacta tgctgagagt gtccatcgat
2821 ggggtcgagt ggagtgacat caagttcttc cagctggcag cccagtggcc cacccatgtc
2881 aagcactttc cagtgggact cttcagtggc agcaaggcca cctgaggccc tgtctcccag
2941 ccactttccc tcctggcact gccaccagcc tcaccgcctg cgggcagggg gaggccagca
3001 ggcccgggcc cagcacccct tccctggcac cagggtctgc ctctcactcg cccaggtccc
3061 gaaggacact gccacaggga cgccttccct cccctcccct ccagcccacc cctgcacagc
3121 ccctcctcct tcccgctttt ccccttctcc ctcctgctcc aggcccaagg cgtgttggtt
3181 ttgccttctg gtgcccatag tcccctggac tgagtccccc aggccttcct tcacccgact
3241 tccaaactct tccttgtggt atcagtttcc ttctcggaaa tgagaaagct ggaatcctgg
3301 tccccagcag gagagcctag tcctccccca gcccctccag ccaccagggt gtcctctagg
3361 atgcagctgc cagatccact cactctgctg cctccagcag gacccaaggc cactttcaac
3421 tcttatgggg ttctccacct gccccagagc ttctcaaggg agggtaaggg ggcaccctga
3481 gcccacagga cccctacttc acagctcaca ggggcaggag gcagctcccc tgcctccagg
3541 accctgttgc tatggtgaca cagcgtttct aggacagagg ggcctcccag tctcccccca
3601 ccacccgtgc acgacttcct caccaccccc aggttccctg cagatgtcgt gtgtgtcctg
3661 agtgtttctt tggttctttg cacgccaagt ctcttggttg taccatgtga cacaccctgt
3721 gcactggtcg ctgtcttcgt ggcttccacc cttgttaatg atgctcctgc ctctgcctcc
3781 cagcccctca cccagcacag ctctgcctgg acttggagag atgggaggca gacccccacc
3841 accatacatg ctgtctgtgg cccctcagac attctgtttc atctcccatt catctccctc
3901 ctcccaccgt gtcagttttt ctgcctttcc ctgctctgtt cttccccctc cttaggcccc
3961 agcctgggcc cagacccatc ctcccagcca ggtttccctc cagcaggctc cttccctccc
4021 tgtcacctcc ctctcaccaa cccggggtct gagcccctca ttcctgaccg tccgtgttct
4081 caggagtggt tgaggacaca gggccccagc ccagccctct gcacccccca gcccggccat
4141 ctgcgcccca cagccccttt ggagcttttc tcttgtcctc tcactccttc ccagaagttt
4201 ttgcacagaa cttcattttg aaagtgtttt tctcattctc catacctccc ccaagctctc
4261 ctccagccct tcccagggct cagccctgct gtcctgagcg tctcctgggc cagagagagg
4321 agatgggggt gggagggact gagttgatgt tgggtttttc attcaataaa ttggtgattt
4381 cttaccgaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//