LOCUS BC052569 5328 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens SMAD family member 6, mRNA (cDNA clone IMAGE:5922640),
with apparent retained intron.
ACCESSION BC052569
VERSION BC052569.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5328)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5328)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: e Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923322
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..5328
/db_xref="H-InvDB:HIT000053793"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5922640"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 1020 a 1478 c 1641 g 1189 t
ORIGIN
1 gctccctcat gttgtcgccc tgcggcgccc cttcgacgac aggctgtgcg cggtctgcac
61 ggcgctccgc ggcggagctt catgtggggc tgcgacccgc gcagccggcg cctcgctgag
121 ggaacggacc cccggtaacc ggagaccgcc tcccccccac ccctggcgcc aaaggatatc
181 gtatgttcag gtccaaacgc tcggggctgg tgcggcgact ttggcgaagt cgtgtggtcc
241 ccgaccggga ggaaggcggc agcggcggcg gcggtggcgg cgacgaggat gggagcttgg
301 gcagccgagc tgagccggcc ccgcgggcaa gagagggcgg aggctgcggc cgctccgaag
361 tccgcccggt agccccgcgg cggccccggg acgcagtggg acagcgaggc gcccagggcg
421 cggggaggcg ccggcgcgca gggggccccc cgaggcccat gtcggagcca ggggccggcg
481 ctgggagctc cctgctggac gtggcggagc cgggaggccc gggctggctg cccgagagtg
541 actgcgagac ggtgacctgc tgtctctttt cggagcggga cgccgccggc gcgccccggg
601 acgccagcga ccccctggcc ggggcggccc tggagccggc gggcggcggg cggagtcgcg
661 aagcgcgctc gcggctgctg ctgctggagc aggaactcaa aaccgtcacg tactcgctgc
721 tgaagcggct caaggagcgc tcgctggaca cgctgctgga ggcggtggag tcccgcggcg
781 gcgtgccggg cggctgcgtg ctggtgccgc gcgccgacct ccgcctgggc ggccagcccg
841 cgccgccgca gctgctgctc ggccgcctct ttcgctggcc cgacctgcag cacgccgtgg
901 agctgaagcc cctgtgcggc tgccacagct tcgccgccgc cgccgacggc cctaccgtgt
961 gctgcaaccc ctaccacttc agccggctct gcgggcccgg tgagcgcgct gcgccggccg
1021 ggggggcccc gggtccccgt ccccatcccc ttccgtgccc ttctctctgt gacactgcgg
1081 gtcggcgcag ctgcgggtgc tcccccgggt gcccttggag cgtgggagcc accaggggag
1141 gcgcctcaga ccggccgagg ggagtgggtg tcccagcaca cacatcaagt ggcaacttta
1201 tctcaaggct ccggtaaact taaaagggta catgtcgtag ttttctctgt gcagtttcag
1261 ggacatgatg taggctccaa cttcataggc agtgaaaggg gagggcaggc caaggagaga
1321 ccaaagaagt aggtgctatt tcctcctacc tcaattccgg aatctacccc agtctgtgcc
1381 caggcttcta gcatttgtat gcacgtgccc ttacccacac tgtgcttttc tatgtccaag
1441 tagctgtaag ttgtgaaatt gggtgtacac aaatcatagc tagaatcaaa agtgttcgtc
1501 aaatgtccaa tttgtgcctt tgcatacttt cgacaaagct ttgcagggta acccctctct
1561 ggagtaaaga gcaccctctt tattccccac ataatatcat tccccacatc ccttgggtgt
1621 caagtgccag ggtcttccat agtccttctc aagttttgtg ttcagctttt gtgtagagtt
1681 tagggtcttg gaggcatccg tgagtagatg aagaagccag atactggatt acctctgaga
1741 actgcccccc ttctttgttc tcctcttggg atttcctgca cacgccccac cctcagcctt
1801 gcttacctgg ccaggccctg gtgctcaggt gcagacaggc agaggcccca gcaggtcagg
1861 aggctccagc aggccaggag cttgcagctg ccttgctctg acctctgtct tgtggggaac
1921 acacacttta gcctgtagct agcctctgag ggatgtatgg gaatccatta gctggcactg
1981 gggttttgca ggggtgggac tggcagggag tcacaggctc ttgagcctgg gagggctctg
2041 aatccctcca ttctggcttc cctggggaga gtcagcaccc aggctgggag cacagagagg
2101 gtcaggttgt aggtctcctg actctgtgtg gaaggggaaa gtgggtctag gatggtgcat
2161 ttgtcctagg tgttttgttt gcgtgtggag tagtgtctgg agaggaaagg aagtttcccc
2221 tcagtgatga ttcctgcata gagggcattg atgggggcgg gtggggaggg gaagtgttga
2281 tgaggcaccc tactcccctc atggtcactc cagtcccaat ttaggagcta tgagcagccc
2341 ctgatatgtg gctcatgcca ggctttctat gtactctttt ccccttactg acagctttcc
2401 ctggaagtga ctttctcccc tctgccaact atgactcccc actgcctctg gggaaggaga
2461 ccagtattta tggttgtctt gttcctggtg attttttttt ttttaaagta ggtcccttcc
2521 actctcgtag aagcccctgg caggtgtatt ctctttcgcc acttcagtgt gcagcagatg
2581 tttgttgagc aattactttg ggccaggcac tgtgctgggt gctgtggcta acagagtgga
2641 aatatgagta ggatctgtgc cctcaagaaa cataatccca ccagggattt atgggggaga
2701 gatgggggaa gaagggaagt gtgcagggcc aggtcattgg gtgtgaacta ccagaaggct
2761 gtgggtgtgt atgtaatagg atggcatgca ggagctccac agctccaacc tggagccgga
2821 ccttggagga tgggtcagag gagagggagc cagccgggtc agaggagagg gagccagcca
2881 gctcagagtc aaggtgccag gcacgttcag gtggttgggc agggagggga ggagtgaaaa
2941 agttggagac gatggacagg accactcctg ctactactcc tgggactagg agttggcttg
3001 ggtgttggtt tgcatttggt aggtttggag aggtacaggt caagagatac ctggcaagct
3061 gcagtagaac agttcttgac catggacctg gtcccaggct ctgcccagct agtaacgtgc
3121 agcttgactt tggatgagtt acctcccttc tcagccaccg tgctggtcag tgggggtggc
3181 tctaggaata ttctccccat ctaaatctgg actaagcctt gggacttgat tcccctcctt
3241 ctcccagaag gaggcgctgt tgccagggct gcagcacccc aagtctcctc ccttttcttt
3301 gctagctgct agcctgtggg gcccccattc agccaccctg gggacagctg ggaggaccga
3361 tggtccggga agagtttcca gtatgtgcca ggttggctag cctgtggggc ccccattcag
3421 ccaccctggg gacagctggg aggaccgatg gtccgggaag agtttccagt atgtgccagg
3481 ttgaccctct tgcccctggc ctgagagctg gggtagccct gggctgccca cctgcctcca
3541 ccgcttggcc gccagcctgg ctcccgtaac tgggcgggcg catagctggg gctcagcggt
3601 gcgcgtcctg ataaggagac tgcgccttcc agggctctgg gaagagggcc ggggcaccgg
3661 gcagacagat gcgcgcacac acatagcgca ggcacaccgc tagcgagcaa agtacactgg
3721 aacaccggca ctgagggact cccacctggc agcagtcacc tccgcacctt taccgaccac
3781 tgcagggagc cccggtgaca gaagacccct tcctgggcag tgtggacccc tgctattcag
3841 agcccactct ccatcaactt gagttgtggc cttggggcta gtttcctctt tgggcttctt
3901 ttcctatatc taaagtaaag ggttggaggg aatctgcaca atctgagggc tgatgtgcag
3961 attccaggcc acacaggcct ccgtcccctc ccccactctg ccccaggctt gtctcggaaa
4021 ctggggtcct caggagggga cccacctctt ctgggcatgg gctaggggcc tcctggcctc
4081 ccagcccgtg ggagtcaggc ccaactctgc ctcccccttg ggtgtctttc tgtcccagga
4141 aaagccagtt cgctgagctc ggtgggtgcc tatgtggacg gaaatgtgga gaaatacttt
4201 aatcacagct ctaacctgtg tttatagagc tcctttctcc tgaaagtatc cattaacttc
4261 ggaataaatc tcctgctctt tgcttcccca cttttttttt tttctgtaat tatattcagt
4321 aaattactat tatccaaatt gcgcccgggg aagagagaca gagcgagaga gagagaactt
4381 ctaaacgact ggaggaggcc gcctaggaaa acacagggtt cccaggccag gactatagga
4441 attagaatgg gctagaaagt tttcctttta tttggcctgg cattatccct ttgaaatgag
4501 atcagtttca agttgggctt ccaagccccc gccctgcccg gctcagcggc ccctagccct
4561 gcttgtctgc tcctcctagc tcctcctgga ggtgaggaag gggtgataat gtgcagtttg
4621 cctcttgctg gcgccagccg gccgcgctgt ttatctggct gccaggggaa tctgggcaat
4681 taggctcagg cggccttaaa gtgccaggag ctccttttct gcgtctccca tcatggggct
4741 tagggttgag tcttcaggtt ctgggggcag gaaggacggg cactcaggag gccacctccg
4801 catccacagc ccctctttgg gaggggggaa acttggcaac ccgggaggca tgtggatctt
4861 ttcctaagca agatgctgag ctggaaagat gggggtgtaa ggtaatgtcc caaactgaaa
4921 ctttgccagg cactgggaga ggctgtgaac tcttttctgg ctttagaatt taggtctaga
4981 tcccaaaagg ctaagtaccc cctgggggct aaccagaggc atgcctgggc tgagctgaac
5041 cttctggtgc actggcccct ggctgactgc tcttctgcag gaagttggag gagattcctg
5101 aagttgattc ctcaggctgg atgtccaagg gggttggagt ttctgatgtc tttctgtctc
5161 cctctctttt ctttctctcc ctaccaggtc cacttctttc agaggggcct gcggtgctct
5221 aaaagttctc ctgttaaagt ttagagcaaa ttggttatta ttttaaaatc aataaaactt
5281 ttaaaagtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//