LOCUS BC051846 977 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:60160
IMAGE:4476019), complete cds.
ACCESSION BC051846
VERSION BC051846.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 977)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 977)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254987.
FEATURES Location/Qualifiers
source 1..977
/db_xref="H-InvDB:HIT000053707"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60160 IMAGE:4476019"
/tissue_type="Prostate, adenocarcinoma."
/clone_lib="NIH_MGC_91"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..977
/gene="LSMD1"
/gene_synonym="MGC14151"
/gene_synonym="PFAAP2"
/db_xref="GeneID:84316"
/db_xref="HGNC:HGNC:28212"
/db_xref="IMGT/GENE-DB:28212"
/db_xref="MIM:28212"
CDS 429..806
/gene="LSMD1"
/gene_synonym="MGC14151"
/gene_synonym="PFAAP2"
/codon_start=1
/product="LSMD1 protein"
/protein_id="AAH51846.1"
/db_xref="GeneID:84316"
/db_xref="HGNC:HGNC:28212"
/db_xref="IMGT/GENE-DB:28212"
/db_xref="MIM:28212"
/translation="MAGAGPTMLLREENGCCSRRQSSSSAGDSDGEREDSAAERARQQ
LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLA
MVPGHHIVSIEVQRESLTGPPYL"
BASE COUNT 329 a 207 c 273 g 168 t
ORIGIN
1 aattgagttg cgccgctttc aggagttgcg gggtggggca gagaacgaat acgctccgtt
61 ttaattcagt ggcctgggct acatgggata tttaggacag actatctctc tgagacagaa
121 aaacaaggga ggaggcagta tgaaagaatg tattctcgct aaattccagt ttctaaagga
181 tgtgtaagaa accagaggta aaggtctcgc gatatcttaa gacatccggc gtagtacgct
241 tcagtgagcc acagcgctag agaagtagga gaagctcgcg agatctgtgc cgttgccgag
301 gagactagga gggggaggag aggggatctc gcgaaaggaa agaggtcggg agcgctcgcg
361 agatctcgga ccacccaacc tgaaaggtgc ttaggaagtt gaaaggccca gaggaggcct
421 ccgggcaaat ggccggagct ggaccgacca tgctgctacg agaagagaat ggctgttgca
481 gtcggcgtca gagcagctcc agtgctgggg attcggacgg agagcgcgag gactcggcgg
541 ctgagcgcgc ccgacagcag ctagaggcgc tgctcaacaa gactatgcgc attcgcatga
601 cagatggacg gacactggtc ggctgcttcc tctgcactga ccgtgactgc aatgtcatcc
661 tgggctcggc gcaggagttc ctcaagccgt cggattcctt ctctgccggg gagccccgtg
721 tgctgggcct ggccatggta cccggacacc acatcgtttc cattgaggtg cagagggaga
781 gtctgaccgg gcctccgtat ctctgaccac gatggcgctt acctttcaga cttcattaaa
841 cttatgaccg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
901 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
961 aaaaaaaaaa aaaaaaa
//