LOCUS BC051830 3586 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAR-related orphan receptor B, mRNA (cDNA clone
MGC:60115 IMAGE:6141868), complete cds.
ACCESSION BC051830
VERSION BC051830.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3586)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3586)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: j Column: 15.
FEATURES Location/Qualifiers
source 1..3586
/db_xref="H-InvDB:HIT000099433"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60115 IMAGE:6141868"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3586
/gene="RORB"
/gene_synonym="bA133M9.1"
/gene_synonym="NR1F2"
/gene_synonym="ROR-BETA"
/gene_synonym="RZRB"
/db_xref="GeneID:6096"
/db_xref="HGNC:HGNC:10259"
/db_xref="MIM:601972"
CDS 630..2009
/gene="RORB"
/gene_synonym="bA133M9.1"
/gene_synonym="NR1F2"
/gene_synonym="ROR-BETA"
/gene_synonym="RZRB"
/codon_start=1
/product="RAR-related orphan receptor B"
/protein_id="AAH51830.1"
/db_xref="GeneID:6096"
/db_xref="HGNC:HGNC:10259"
/db_xref="MIM:601972"
/translation="MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASY
SCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQ
RLQEQRQQQSGEAEALARVYSSSISNGLSNLNNETSGTYANGHVIDLPKSEGYYNVDS
GQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQN
IIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEF
AKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALG
SDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFAL
QHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEIVNTLFPPLYKELF
NPDCATGCK"
BASE COUNT 1113 a 762 c 718 g 993 t
ORIGIN
1 ctttctctct cgctgctccc ttcctccctg taactgaaca gtgaaaattc acattgtgga
61 tccgctaaca ggcacagatg tcatgtgaaa acgcacatgc tctgccatcc acaccgcctt
121 tctttctttt ctttctgttt ccttttttcc cccttgttcc ttctccctct tctttgtaac
181 taacaaaacc accaccaact cctcctcctg ctgctgccct tcctcctcct cctcagtcca
241 agtgatcaca aaagaaatct tctgagccgg aggcggtggc attttttaaa aagcaagcac
301 attggagaga aagaaaaaga aaaacaaaac caaaacaaaa cccaggcacc agacagccag
361 aacatttttt tttcaccctt cctgaaaaca aacaaacaaa caaacaatca tcaaaacagt
421 caccaccaac atcaaaactg ttaacatagc ggcggcggcg gcaaacgtca ccctgcagcc
481 acggcgtccg cctaaaggga tggttttctc ggcagagcag ctcttcgccg accaccttct
541 tcactcgtgc tgagcgggat ttttgggctc tccggggttc gggctgggag cagcttcatg
601 actacgcgga gcgggagagc ggccacacca tgcgagcaca aattgaagtg ataccatgca
661 aaatttgtgg cgataagtcc tctgggatcc actacggagt catcacatgt gaaggctgca
721 agggattctt taggaggagc cagcagaaca atgcttctta ttcctgccca aggcagagaa
781 actgtttaat tgacagaacg aacagaaacc gttgccaaca ctgccgactg cagaagtgtc
841 ttgccctagg aatgtcaaga gatgctgtga agtttgggag aatgtccaag aagcaaaggg
901 acagcctgta tgctgaggtg cagaagcacc agcagcggct gcaggaacag cggcagcagc
961 agagtgggga ggcagaagcc cttgccaggg tgtacagcag cagcattagc aacggcctga
1021 gcaacctgaa caacgagacc agcggcactt atgccaacgg gcacgtcatt gacctgccca
1081 agtctgaggg ttattacaac gtcgattccg gtcagccgtc ccctgatcag tcaggacttg
1141 acatgactgg aatcaaacag ataaagcaag aacctatcta tgacctcaca tccgtaccca
1201 acttgtttac ctatagctct ttcaacaatg ggcagttagc accagggata accatgactg
1261 aaatcgaccg aattgcacag aacatcatta agtcccattt ggagacatgt caatacacca
1321 tggaagagct gcaccagctg gcgtggcaga cccacaccta tgaagaaatt aaagcatatc
1381 aaagcaagtc cagggaagca ctgtggcaac aatgtgccat ccagatcact cacgccatcc
1441 aatacgtggt ggagtttgca aagcggataa caggcttcat ggagctctgt caaaatgatc
1501 aaattctact tctgaagtca ggttgcttgg aagtggtttt agtgagaatg tgccgtgcct
1561 tcaacccatt aaacaacact gttctgtttg aaggaaaata tggaggaatg caaatgttca
1621 aagccttagg ttctgatgac ctagtgaatg aagcatttga ctttgcaaag aatttgtgtt
1681 ccttgcagct gaccgaggag gagatcgctt tgttctcatc tgctgttctg atatctccag
1741 accgagcctg gcttatagaa ccaaggaaag tccagaagct tcaggaaaaa atttattttg
1801 cacttcaaca tgtgattcag aagaatcacc tggatgatga gaccttggca aagttaatag
1861 ccaagatacc aaccatcacg gcagtttgca acttgcacgg ggagaagctg caggtattta
1921 agcaatctca tccagagata gtgaatacac tgtttcctcc gttatacaag gagctcttta
1981 atcctgactg tgccaccggc tgcaaatgaa ggggacaaga gaactgtctc atagtcatgg
2041 aatgcatcac cattaagaca aaagcaatgt gttcatgaag acttaagaaa aatgtcacta
2101 ctgcaacatt aggaatgtcc tgcacttaat agaattattt ttcaccgcta cagtttgaag
2161 aatgtaaata tgcacctgag tggggctctt ttatttgttt gtttgttttt gaaatgacca
2221 taaatataca aatataggac actgggtgtt atcctttttt taattttatt cgggtatgtt
2281 ttgggagaca actgtttata gaattttatt gtagatatat acaagaaaag agcggtactt
2341 tacatgatta cttttcctgt tgattgttca aatataattt aagaaaattc cacttaatag
2401 gcttacctat ttctatgttt ttaggtagtt gatgcatgtg taaatttgta gctgtcttgg
2461 aaagtactgt gcatgtatgt aataagtata taatatgtga gaatattata tatgactatt
2521 acttatacat gcacatgcac tgtggcttaa ataccatacc tactagcaat ggaggttcag
2581 tcaggctctc ttctatgatt taccttctgt gttatatgtt acctttatgt tagacaatca
2641 ggattttgtt ttcccagcca gagttttcat ctatagtcaa tggcaggacg gtaccaactc
2701 agagttaagt ctacaaagga ataaacataa tgtgtggcct ctatatacaa actctatttc
2761 tgtcaatgac atcaaagcct tgtcaagatg gttcatattg ggaaggagac agtattttaa
2821 gccattttcc tgtttcaaga attaggccac agataacatt gcaaggtcca agactttttt
2881 gaccaaacag tagatatttt ctatttttca ccagaacaca taaaaacact ttttttcttt
2941 tggatttctg gttgtgaaac aagcttgatt tcagtgctta ttgtgtcttc aactgaaaaa
3001 tacaatctgt ggattatgac taccagcaat ttttttctag gaaagttaaa agaataaatc
3061 agaacccagg gcaacaatgc catttcatgt aaacattttc tctctcacca tgttttggca
3121 agaaaaggta gaaagagaag acccagagtg aagaagtaat tctttatatt cctttcttta
3181 atgtatttgt taggaaaagt ggcaataaag ggggaggcat attataaaat gctataatat
3241 aaaaatgtag caaaaacttg acagactaga aaaaaaaaga tctgtgttat tctagggaac
3301 taatgtaccc caaagccaaa actaattcct gtgaagttta cagttacatc atccatttac
3361 cctagaatta tttttttagc aacttttaga aataaagaat acaactgtga cattaggatc
3421 agagatttta gacttccttg tacaaattct cacttctcca cctgctcacc aatgaaatta
3481 atcataagaa aagcatatat tccaagaaat ttgttctgcc tgtgtcctgg aggcctatac
3541 ctctgttatt ttctgataca aaataaaact taaaaaaaaa aaaaaa
//