LOCUS BC051825 2898 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a, member 1, mRNA (cDNA clone
IMAGE:6502029), partial cds.
ACCESSION BC051825
VERSION BC051825.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2898)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2898)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: o Column: 17.
FEATURES Location/Qualifiers
source 1..2898
/db_xref="H-InvDB:HIT000099430"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6502029"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..>2898
/gene="SMARCA1"
/gene_synonym="ISWI"
/gene_synonym="NURF140"
/gene_synonym="SNF2LB"
/gene_synonym="SWI"
/gene_synonym="SWI2"
/db_xref="GeneID:6594"
/db_xref="HGNC:HGNC:11097"
/db_xref="MIM:300012"
CDS <1..>2898
/gene="SMARCA1"
/gene_synonym="ISWI"
/gene_synonym="NURF140"
/gene_synonym="SNF2LB"
/gene_synonym="SWI"
/gene_synonym="SWI2"
/codon_start=2
/product="SMARCA1 protein"
/protein_id="AAH51825.2"
/db_xref="GeneID:6594"
/db_xref="HGNC:HGNC:11097"
/db_xref="MIM:300012"
/translation="FQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH
FIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTS
NVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG
YLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPG
EWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLT
GTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLR
RIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ
LRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTR
LLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL
ASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR
LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKK
TAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANY
AVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKV
PRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANE
KYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRIS
IKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELR
QCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAKKKK"
BASE COUNT 986 a 501 c 656 g 755 t
ORIGIN
1 atttcaactc aaacttgctg ctaaagcgcc taaatctgaa aaggaaatgg acccagaata
61 tgaagagaaa atgaaagccg accgagcaaa gagatttgaa tttttactga agcagacaga
121 actttttgca catttcattc agccttcagc acagaaatct ccaacatctc cactgaacat
181 gaaattggga cgtccccgaa taaagaaaga tgaaaagcag agcttaattt ctgctggaga
241 ctaccgccat aggcgcacag agcaagaaga agatgaagag ctactgtctg agagtcggaa
301 aacatctaat gtgtgtatta gatttgaggt gtcaccttca tatgtgaaag gggggccact
361 gagagattat cagattcgag gactgaattg gttgatctct ttatatgaaa atggagtcaa
421 tggcattttg gctgatgaaa tgggccttgg gaaaacttta caaacaattg ctttgcttgg
481 ttacctgaaa cactaccgaa atattcctgg acctcacatg gttttagttc caaagtctac
541 tttacacaac tggatgaatg aatttaaacg atgggtccca tctctccgtg tcatttgttt
601 tgtcggagac aaggatgcca gagctgcttt tattcgtgat gaaatgatgc caggagagtg
661 ggatgtttgc gttacttctt atgagatggt aattaaagaa aaatctgtat tcaaaaagtt
721 tcactggcga tacctggtca ttgatgaagc tcacagaata aagaatgaaa aatctaagct
781 ttcagagatt gttcgtgagt tcaagtcgac taaccgcttg ctcctaactg gaacaccttt
841 gcagaataac ctgcatgaac tgtgggcctt actcaacttt ttattgcctg atgtctttaa
901 ttctgcagat gactttgatt cttggtttga cactaaaaat tgtcttggtg atcaaaaact
961 cgtggaaaga cttcatgcag ttttaaaacc atttttgtta cgccgtataa aaactgatgt
1021 agagaagagt ctgccaccta aaaaggaaat aaagatttac ttggggctga gtaagatgca
1081 acgagaatgg tatacaaaaa tcctgatgaa agatattgat gttttaaact cttctggcaa
1141 gatggacaag atgcgactct taaacattct gatgcagctt cgaaagtgtt gtaatcatcc
1201 atatctgttt gatggtgctg aacctggtcc accttatacc actgatgagc atattgtcag
1261 caacagtggt aaaatggtag ttctggataa actattggcc aaactcaaag aacagggttc
1321 aagggttctc attttcagcc agatgactcg cttgctggat attttggaag attattgcat
1381 gtggcgtggt tatgagtatt gtcgactgga tggacaaacc ccgcatgaag aaagagagga
1441 agcaatagag gcttttaatg ctcctaatag tagcaaattc atctttatgc taagtaccag
1501 ggctggaggt ctcggaatta acctggcaag tgctgatgtg gttatactat atgattcaga
1561 ctggaaccca caggttgatc tacaagctat ggatcgagca catcgtattg gtcagaagaa
1621 accagtacgt gtattccgtc tcatcactga caacactgtt gaagagagga ttgtagaaag
1681 agctgagata aaactgagac tcgattcaat tgttatacaa caaggaagac tcattgacca
1741 acagtctaac aagctggcaa aagaggaaat gttacaaatg atacggcatg gagccaccca
1801 tgtttttgct tctaaagaga gtgagttgac agatgaagac attacaacta ttctggaaag
1861 aggggaaaag aagactgcag agatgaatga acgcctgcaa aaaatgggag agtcttctct
1921 aagaaatttt agaatggaca ttgaacaaag tttatacaaa tttgagggag aagattatag
1981 agaaaaacag aagcttggca tggtggaatg gattgaacct cctaaacgag aacgcaaagc
2041 aaactacgca gtggatgcct actttagaga ggctttgcgt gtcagcgagc caaagattcc
2101 aaaggctcca cggcctccaa aacagccaaa tgttcaggat tttcaatttt tcccaccacg
2161 cttatttgag ctcctggaaa aggaaattct ttattatcgg aagacaatag gctataaggt
2221 tccaaggaat cctgatatcc caaatccagc tctggctcaa agagaagagc aaaaaaagat
2281 tgatggagct gaacctctta caccagaaga gactgaagaa aaggaaaaac ttctcacaca
2341 aggtttcaca aactggacta aacgagattt taaccagttt attaaagcta atgagaaata
2401 tggaagagat gacattgata acatagctcg agaggtagag ggcaaatccc ctgaggaggt
2461 catggagtat tcagctgtat tttgggaacg ttgcaatgaa ttacaggaca ttgagaaaat
2521 tatggctcaa attgaacgtg gagaagcaag aattcaacga aggatcagta tcaagaaagc
2581 cctggatgcc aaaattgcaa gatacaaggc tccatttcat cagttgcgca ttcagtatgg
2641 aaccagcaaa ggaaagaact atactgagga agaagataga ttcttgattt gtatgttaca
2701 caaaatgggc tttgatagag aaaatgtata tgaagaatta agacagtgtg tacgaaatgc
2761 tccccagttt agatttgact ggtttatcaa gtctaggact gccatggaat tccagagacg
2821 ctgtaacact ctgatttcat tgattgagaa agaaaatatg gaaattgagg aaagagagag
2881 agcaaaaaaa aaaaaaaa
//