LOCUS BC051824 3675 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens histone deacetylase 5, mRNA (cDNA clone MGC:60081
IMAGE:6043491), complete cds.
ACCESSION BC051824
VERSION BC051824.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: h Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62750346.
FEATURES Location/Qualifiers
source 1..3675
/db_xref="H-InvDB:HIT000053695"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60081 IMAGE:6043491"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3675
/gene="HDAC5"
/gene_synonym="HD5"
/gene_synonym="NY-CO-9"
/db_xref="GeneID:10014"
/db_xref="HGNC:HGNC:14068"
/db_xref="MIM:605315"
CDS 212..3580
/gene="HDAC5"
/gene_synonym="HD5"
/gene_synonym="NY-CO-9"
/codon_start=1
/product="histone deacetylase 5"
/protein_id="AAH51824.1"
/db_xref="GeneID:10014"
/db_xref="HGNC:HGNC:14068"
/db_xref="MIM:605315"
/translation="MNSPNESDGMSGREPSLEILPRTSLHSIPVTVEVKPVLPRAMPS
SMGGGGGGSPSPVELRGALVGSVDPTLREQQLQQELLALKQQQQLQKQLLFAEFQKQH
DHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLAAKRQQELEQQRQREQQRQEELEKQRL
EQQLLILRNKEKSKESAIASTEVKLRLQEFLLSKSKEPTPGGLNHSLPQHPKCWGAHH
ASLDQSSPPQSGPPGTPPSYKLPLPGPYDSRDDFPLRKTASEPNLKVRSRLKQKVAER
RSSPLLRRKDGTVISTFKKRAVEITGAGPGASSVCNSAPGSGPSSPNSSHSTIAENGF
TGSVPNIPTEMLPQHRALPLDSSPNQFSLYTSPSLPNISLGLQATVTVTNSHLTASPK
LSTQQEAERQALQSLRQGGTLTGKFMSTSSIPGCLLGVALEGDGSPHGHASLLQHVLL
LEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPRHRPLSRTQSSPLPQSPQAL
QQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQEVLLGE
GALTMPREGSTESESTQEDLEEEDEEEDGEEEEDCIQVKDEEGESGAEEGPDLEEPGA
GYKKLFSDAQPLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGGMKSPPDQPVKHLFT
TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEI
QTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSS
SAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQ
QKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGP
GVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSP
LGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPL
DEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGETEEAETVSA
MALLSVGAEQAQAAAAREHSPRPAEEPMEQEPAL"
BASE COUNT 789 a 1148 c 1107 g 631 t
ORIGIN
1 gacaggggcg ccttccctac agggatgccg ttctgagtgc ctgactgcct cgccccgaag
61 gatggcctcg gatgggcatt agaggcacgg cggccccggg ctcccgtccc gtccgtctgt
121 ctgttatcgt ctgtctctct tgacatcacc gcagctccac cccctcccgt cccagccccc
181 aacgccagct tcctgcaggc ccagagccgg catgaactct cccaacgagt cggatgggat
241 gtcaggtcgg gaaccatcct tggaaatcct gccgcggact tctctgcaca gcatccctgt
301 gacagtggag gtgaagccgg tgctgccaag agccatgccc agttccatgg ggggtggggg
361 tggaggcagc cccagccctg tggagctacg gggggctctg gtgggctctg tggaccccac
421 actgcgggag cagcaactgc agcaggagct cctggcgctc aagcagcagc agcagctgca
481 gaagcagctc ctgttcgctg agttccagaa acagcatgac cacctgacaa ggcagcatga
541 ggtccagctg cagaagcacc tcaagcagca gcaggagatg ctggcagcca agcagcagca
601 ggagatgctg gcagccaagc ggcagcagga gctggagcag cagcggcagc gggagcagca
661 gcggcaggaa gagctggaga agcagcggct ggagcagcag ctgctcatcc tgcggaacaa
721 ggagaagagc aaagagagtg ccattgccag cactgaggta aagctgaggc tccaggaatt
781 cctcttgtcg aagtcaaagg agcccacacc aggcggcctc aaccattccc tcccacagca
841 ccccaaatgc tggggagccc accatgcttc tttggaccag agttcccctc cccagagcgg
901 cccccctggg acgcctccct cctacaaact gcctttgcct gggccctacg acagtcgaga
961 cgacttcccc ctccgcaaaa cagcctctga acccaacttg aaagtgcgtt caaggctaaa
1021 acagaaggtg gctgagcgga gaagcagtcc cctcctgcgt cgcaaggatg ggactgttat
1081 tagcaccttt aagaagagag ctgttgagat cacaggtgcc gggcctgggg cgtcgtccgt
1141 gtgtaacagc gcacccggct ccggccccag ctctcccaac agctcccaca gcaccatcgc
1201 tgagaatggc tttactggct cagtccccaa catccccact gagatgctcc ctcagcaccg
1261 agccctccct ctggacagct cccccaacca gttcagcctc tacacgtctc cttctctgcc
1321 caacatctcc ctagggctgc aggccacggt cactgtcacc aactcacacc tcactgcctc
1381 cccgaagctg tcgacacagc aggaggccga gaggcaggcc ctccagtccc tgcggcaggg
1441 tggcacgctg accggcaagt tcatgagcac atcctctatt cctggctgcc tgctgggcgt
1501 ggcactggag ggcgacggga gcccccacgg gcatgcctcc ctgctgcagc atgtgctgtt
1561 gctggagcag gcccggcagc agagcaccct cattgctgtg ccactccacg ggcagtcccc
1621 actagtgacg ggtgaacgtg tggccaccag catgcggacg gtaggcaagc tcccgcggca
1681 tcggcccctg agccgcactc agtcctcacc gctgccgcag agtccccagg ccctgcagca
1741 gctggtcatg caacaacagc accagcagtt cctggagaag cagaagcagc agcagctaca
1801 gctgggcaag atcctcacca agacagggga gctgcccagg cagcccacca cccaccctga
1861 ggagacagag gaggagctga cggagcagca ggaggtcttg ctgggggagg gagccctgac
1921 catgccccgg gagggctcca cagagagtga gagcacacag gaagacctgg aggaggagga
1981 cgaggaagag gatggggagg aggaggagga ttgcatccag gttaaggacg aggagggcga
2041 gagtggtgct gaggaggggc ccgacttgga ggagcctggt gctggataca aaaaactgtt
2101 ctcagatgcc cagccgctgc agcctttgca ggtgtaccag gcgcccctca gcctggccac
2161 tgtgccccac caggccctgg gccgtaccca gtcctcccct gctgcccctg ggggcatgaa
2221 gagcccccca gaccagcccg tcaagcacct cttcaccaca ggtgtggtct acgacacgtt
2281 catgctaaag caccagtgca tgtgcgggaa cacacacgtg caccctgagc atgctggccg
2341 gatccagagc atctggtccc ggctgcagga gacaggcctg cttagcaagt gcgagcggat
2401 ccgaggtcgc aaagccacgc tagatgagat ccagacagtg cactctgaat accacaccct
2461 gctctatggg accagtcccc tcaaccggca gaagctagac agcaagaagt tgctcggccc
2521 catcagccag aagatgtatg ctgtgctgcc ttgtgggggc atcggggtgg acagtgacac
2581 cgtgtggaat gagatgcact cctccagtgc tgtgcgcatg gcagtgggct gcctgctgga
2641 gctggccttc aaggtggctg caggagagct caagaatgga tttgccatca tccggccccc
2701 aggacaccac gccgaggaat ccacagccat gggattctgc ttcttcaact ctgtagccat
2761 caccgcaaaa ctcctacagc agaagttgaa cgtgggcaag gtcctcatcg tggactggga
2821 cattcaccat ggcaatggca cccagcaggc gttctacaat gacccctctg tgctctacat
2881 ctctctgcat cgctatgaca acgggaactt ctttccaggc tctggggctc ctgaagaggt
2941 tggtggagga ccaggcgtgg ggtacaatgt gaacgtggca tggacaggag gtgtggaccc
3001 ccccattgga gacgtggagt accttacagc cttcaggaca gtggtgatgc ccattgccca
3061 cgagttctca cctgatgtgg tcctagtctc cgccgggttt gatgctgttg aaggacatct
3121 gtctcctctg ggtggctact ctgtcaccgc cagatgtttt ggccacttga ccaggcagct
3181 gatgaccctg gcagggggcc gggtggtgct ggccctggag ggaggccatg acttgaccgc
3241 catctgtgat gcctctgagg cttgtgtctc ggctctgctc agtgtagagc tgcagccctt
3301 ggatgaggca gtcttgcagc aaaagcccaa catcaacgca gtggccacgc tagagaaagt
3361 catcgagatc cagagcaaac actggagctg tgtgcagaag ttcgccgctg gtctgggccg
3421 gtccctgcga gaggcccaag caggtgagac cgaggaggcc gagactgtga gcgccatggc
3481 cttgctgtcg gtgggggccg agcaggccca ggctgcggca gcccgggaac acagccccag
3541 gccggcagag gagcccatgg agcaggagcc tgccctgtga cgccccggcc cccatccctc
3601 tgggcttcac cattgtgatt ttgtttattt tttctattaa aaacaaaaag tcacacattc
3661 aaaaaaaaaa aaaaa
//