LOCUS BC051817 1378 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens sorting nexin family member 27, mRNA (cDNA clone
IMAGE:6504266), partial cds.
ACCESSION BC051817
VERSION BC051817.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1378)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1378)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28872815.
FEATURES Location/Qualifiers
source 1..1378
/db_xref="H-InvDB:HIT000099426"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6504266"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1378
/gene="SNX27"
/gene_synonym="KIAA0488"
/gene_synonym="MGC20471"
/gene_synonym="MY014"
/db_xref="GeneID:81609"
CDS <1..852
/gene="SNX27"
/gene_synonym="KIAA0488"
/gene_synonym="MGC20471"
/gene_synonym="MY014"
/codon_start=1
/product="SNX27 protein"
/protein_id="AAH51817.1"
/db_xref="GeneID:81609"
/translation="VCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTV
RVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYT
SAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKL
YEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLE
NQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCEL
KWRKEEY"
misc_feature 85..666
/gene="SNX27"
/gene_synonym="KIAA0488"
/gene_synonym="MGC20471"
/gene_synonym="MY014"
/note="B41; Region: Band 4.1 homologues"
/db_xref="CDD:smart00295"
BASE COUNT 416 a 279 c 329 g 354 t
ORIGIN
1 gtgtgttcaa tacgagtaat tggtgagagt gacatcatgc aggaattcct atcagaatcc
61 gatgagaact acaatggtgt gtccgacgta gagctgagag tagcattacc agatggaaca
121 acggttacag tcagggttaa aaagaacagt actacagacc aagtatatca ggctatcgca
181 gcaaaggttg gcatggacag tacgacagtg aattactttg ccttatttga agtgatcagt
241 cactcctttg tacgtaaatt ggcacctaat gagtttcctc acaaactcta cattcagaat
301 tatacatcag ctgtgccagg cacctgcttg accattcgaa agtggctttt tacaacagaa
361 gaagaaattc tcttaaatga caatgacctt gctgttacct acttctttca tcaggcagtc
421 gatgatgtga agaaaggtta catcaaagca gaagaaaagt cctatcaatt acagaagcta
481 tacgaacaaa gaaaaatggt catgtacctc aacatgctaa ggacttgtga gggctacaat
541 gaaatcatct ttccccactg tgcctgtgac tccaggagga aggggcacgt tatcacagcc
601 atcagcatca cgcactttaa actgcatgcc tgcactgaag aaggacagct ggagaaccag
661 gtaattgcat ttgaatggga tgagatgcag cgatgggaca cagatgaaga agggatggcc
721 ttctgtttcg aatatgcacg aggagagaag aagccccgat gggttaaaat cttcacgcca
781 tatttcaatt acatgcatga gtgcttcgag agggtgttct gcgagctcaa gtggagaaaa
841 gaggaatatt agttagagac tgattatctc atgtgagcca ggacattctt ccagcaaggt
901 tggcctctgg atggtgaacg ggctgtgcaa aaaagccctg cttcttccct tgtctagagg
961 gtggacattg gctacaggct cttccatctc tcatgacttc atggaccctc ctctgccagt
1021 tttttaaatc agatcaccct ccatgttgtt cctgacccac aggggaagct gtcctcagtt
1081 gtagccgtct tgactggatg agtcctggca gtctttctag gcgaaccaag aatgtttgtg
1141 tgagggaagg tgtttgctgt tgctttactg ctgtctgtat gtgccagtgc tggaacagaa
1201 tttggaagat tctgaataat tagttactta ttctcaaaga aaatctttga aagaatcagg
1261 agaattgctt gaacccaaga ggcggaggtt gtggtgagcc gagattgcac ctttgtactc
1321 cagcctgggc aacgagcaaa aaactctgtc tcaaaaaaaa aaaaaaaaaa aaaaaaaa
//