LOCUS BC051795 4382 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens atrophin 1, mRNA (cDNA clone MGC:57647 IMAGE:4181592),
complete cds.
ACCESSION BC051795
VERSION BC051795.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4382)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4382)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC051795.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: a Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55750052.
FEATURES Location/Qualifiers
source 1..4382
/db_xref="H-InvDB:HIT000053685"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57647 IMAGE:4181592"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4382
/gene="ATN1"
/gene_synonym="B37"
/gene_synonym="NOD"
/db_xref="GeneID:1822"
/db_xref="HGNC:HGNC:3033"
/db_xref="MIM:607462"
CDS 249..3824
/gene="ATN1"
/gene_synonym="B37"
/gene_synonym="NOD"
/codon_start=1
/product="atrophin 1"
/protein_id="AAH51795.1"
/db_xref="GeneID:1822"
/db_xref="HGNC:HGNC:3033"
/db_xref="MIM:607462"
/translation="MKTRQNKDSMSMRSGRKKEAPGPREELRSRGRASPGGVSTSSSD
GKAEKSRQTAKKARVEEASTPKVNKQGRSEEISESESEETNAPKKTKTEQELPRPQSP
SDLDSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYH
PPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQ
LYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPP
TTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHA
MGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSS
SSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGR
LLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQQHHGNS
GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG
PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVAS
SPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAG
PGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPES
PVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLAKKRA
DLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPSLG
PVPHRPPFEPGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDP
GLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSELEPLHGVPGPGLDPF
PRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRPDMSYAERLAAERQHAE
RVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQQDAIHAASASVHPLIDPLASGS
HLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAPYRDLPASLSAPMSAAHQLQAMHA
QSAELQRLALEQQQWLHAHHPLHSVPLPAQEDYYSHLKKESDKPL"
BASE COUNT 894 a 1614 c 1098 g 776 t
ORIGIN
1 cccacgcgtc cgacgccata ctggacgcca agtgggagga acttcaaggc tgtcccctgc
61 gggcctcccg ctctgcttct gcgaaggttt cattgaaaac agatcctgca aaagttccag
121 gtgcccacac tggaaacttg gagatcctgc ttcccagacc acagctgtgg ggaacttggg
181 gtggagcaga gaagtttctg tattcagctg cccaggcaga ggagaatggg gtctccacag
241 cctgaagaat gaagacacga cagaataaag actcgatgtc aatgaggagt ggacggaaga
301 aagaggcccc tgggccccgg gaagaactga gatcgagggg ccgggcctcc cctggagggg
361 tcagcacgtc cagcagtgat ggcaaagctg agaagtccag gcagacagcc aagaaggccc
421 gagtagagga agcctccacc ccaaaggtca acaagcaggg tcggagtgag gagatctcag
481 agagtgaaag tgaggagacc aatgcaccaa aaaagaccaa aactgagcag gaactccctc
541 ggccacagtc tccctccgat ctggatagct tggacgggcg gagccttaat gatgatggca
601 gcagcgaccc tagggatatc gaccaggaca accgaagcac gtcccccagt atctacagcc
661 ctggaagtgt ggagaatgac tctgactcat cttctggcct gtcccagggc ccagcccgcc
721 cctaccaccc acctccactc tttcctcctt cccctcaacc gccagacagc acccctcgac
781 agccagaggc tagctttgaa ccccatcctt ctgtgacacc cactggatat catgctccca
841 tggagccccc cacatctcga atgttccagg ctcctcctgg ggcccctccc cctcacccac
901 agctctatcc tgggggcact ggtggagttt tgtctggacc cccaatgggt cccaaggggg
961 gaggggctgc ctcatcagtg gggggcccta atgggggtaa gcagcacccc ccacccacta
1021 ctcccatttc agtatcaagc tctggggcta gtggtgctcc cccaacaaag ccgcctacca
1081 ctccagtggg tggtgggaac ctaccttctg ctccaccacc agccaacttc ccccatgtga
1141 caccgaacct gcctccccca cctgccctga gacccctcaa caatgcatca gcctctcccc
1201 ctggcctggg ggcccaacca ctacctggtc atctgccctc tccccacgcc atgggacagg
1261 gtatgggtgg acttcctcct ggcccagaga agggcccaac tctggctcct tcaccccact
1321 ctctgcctcc tgcttcctct tctgctccag cgccccccat gaggtttcct tattcatcct
1381 ctagtagtag ctctgcagca gcctcctctt ccagttcttc ctcctcttcc tctgcctccc
1441 ccttcccagc ttcccaggca ttgcccagct acccccactc tttccctccc ccaacaagcc
1501 tctctgtctc caatcagccc cccaagtata ctcagccttc tctcccatcc caggctgtgt
1561 ggagccaggg tcccccacca cctcctccct atggccgcct cttagccaac agcaatgccc
1621 atccaggccc cttccctccc tctactgggg cccagtccac cgcccaccca ccagtctcaa
1681 cacatcacca tcaccaccag caacagcaac agcagcagca gcagcagcag cagcagcagc
1741 agcagcagca gcagcagcat cacggaaact ctgggccccc tcctcctgga gcatttcccc
1801 acccactgga gggcggtagc tcccaccacg cacaccctta cgccatgtct ccctccctgg
1861 ggtctctgag gccctaccca ccagggccag cacacctgcc cccacctcac agccaggtgt
1921 cctacagcca agcaggcccc aatggccctc cagtctcttc ctcttccaac tcttcctctt
1981 ccacttctca agggtcctac ccatgttcac acccctcccc ttcccagggc cctcaagggg
2041 cgccctaccc tttcccaccg gtgcctacgg tcaccacctc ttcggctacc ctttccacgg
2101 tcattgccac cgtggcttcc tcgccagcag gctacaaaac ggcctcccca cctgggcccc
2161 caccgtacgg aaagagagcc ccgtccccgg gggcctacaa gacagccacc ccacccggat
2221 acaaacccgg gtcgcctccc tccttccgaa cggggacccc accgggctat cgaggaacct
2281 cgccacctgc aggcccaggg accttcaagc cgggctcgcc caccgtggga cctgggcccc
2341 tgccacctgc ggggccctca ggcctgccat cgctgccacc accacctgcg gcccctgcct
2401 cagggccgcc cctgagcgcc acgcagatca aacaggagcc ggctgaggag tatgagaccc
2461 ccgagagccc ggtgccccca gcccgcagcc cctcgccccc tcccaaggtg gtagatgtac
2521 ccagccatgc cagtcagtct gccaggttca acaaacacct ggatcgcggc ttcaactcgt
2581 gcgcgcgcag cgacctgtac ttcgtgccac tggagggctc caagctggcc aagaagcggg
2641 ccgacctggt ggagaaggtg cggcgcgagg ccgagcagcg agcgcgcgaa gaaaaggagc
2701 gcgagcgcga gcgggaacgc gagaaagagc gcgagcgcga gaaggagcgc gagcttgaac
2761 gcagcgtgaa gttggctcag gagggccgtg ctccggtgga atgcccatct ctgggcccag
2821 tgccccatcg ccctccattt gaaccgggca gtgcggtggc tacagtgccc ccctacctgg
2881 gtcctgacac tccagccttg cgcactctca gtgaatatgc ccggcctcat gtcatgtctc
2941 ctggcaatcg caaccatcca ttctacgtgc ccctgggggc agtggacccg gggctcctgg
3001 gttacaatgt cccggccctg tacagcagtg atccagctgc ccgggagagg gaacgggaag
3061 cccgtgaacg agacctccgt gaccgcctca agcctggctt tgaggtgaag cctagtgagc
3121 tggaacccct acatggggtc cctgggccgg gcttggatcc ctttccccga catgggggcc
3181 tggctctgca gcctggccca cctggcctgc accctttccc ctttcatccg agcctggggc
3241 ccctggagcg agaacgtcta gcgctggcag ctgggccagc cctgcggcct gacatgtcct
3301 atgctgagcg gctggcagct gagaggcagc acgcagaaag ggtggcggcc ctgggcaatg
3361 acccactggc ccggctgcag atgctcaatg tgactcccca tcaccaccag cactcccaca
3421 tccactcgca cctgcacctg caccagcaag atgctatcca tgcagcctct gcctcggtgc
3481 accctctcat tgaccccctg gcctcagggt ctcaccttac ccggatcccc tacccagctg
3541 gaactctccc taaccccctg cttcctcacc ctctgcacga gaacgaagtt cttcgtcacc
3601 agctctttgc tgccccttac cgggacctgc cggcctccct ttctgccccg atgtcagcag
3661 ctcatcagct gcaggccatg cacgcacagt cagctgagct gcagcgcttg gcgctggaac
3721 agcagcagtg gctgcatgcc catcacccgc tgcacagtgt gccgctgcct gcccaggagg
3781 actactacag tcacctgaag aaggaaagcg acaagccact gtagaacctg cgatcaagag
3841 agcaccatgg ctcctacatt ggaccttgga gcacccccac cctcccccca ccgtgccctt
3901 ggcctgccac ccagagccaa gagggtgctg ctcagttgca gggcctccgc agctggacag
3961 agagtggggg agggagggac agacagaagg ccaaggcccg atgtggtgtg cagaggtggg
4021 gaggtggcga ggatggggac agaaagcgca cagaatcttg gaccaggtct ctcttccttg
4081 tcccccctgc ttttctcctc ccccatgccc aacccctgtg gccgccgccc ctcccctgcc
4141 ccgttggtgt gattatttca tctgttagat gtggctgttt tgcgtagcat cgtgtgccac
4201 ccctgcccct ccccgatccc tgtgtgcgcg ccccctctgc aatgtatgcc ccttgcccct
4261 tccccacact aataatttat atatataaat atctatatga cgctcttaaa aaaacatccc
4321 aaccaaaacc aaccaaacaa aaacatcctc acaactcccc aaaaaaaaaa aaaaaaaaaa
4381 aa
//