LOCUS BC051788 4744 bp mRNA linear HUM 19-JAN-2018 DEFINITION Homo sapiens protocadherin gamma subfamily B, 7, mRNA (cDNA clone MGC:57549 IMAGE:4941167), complete cds. ACCESSION BC051788 VERSION BC051788.3 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4744) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4744) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov REFERENCE 3 (bases 1 to 4744) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-JAN-2018) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK Sequence update by database staff to remove vector contamination COMMENT On Jan 19, 2018 this sequence version replaced BC051788.2. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 107 Row: c Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14270506. FEATURES Location/Qualifiers source 1..4744 /db_xref="H-InvDB:HIT000053681" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:57549 IMAGE:4941167" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4744 /gene="PCDHGB7" /gene_synonym="ME6" /gene_synonym="PCDH-GAMMA-B7" /db_xref="GeneID:56099" /db_xref="HGNC:HGNC:8714" /db_xref="MIM:606304" CDS 168..2957 /gene="PCDHGB7" /gene_synonym="ME6" /gene_synonym="PCDH-GAMMA-B7" /codon_start=1 /product="protocadherin gamma subfamily B, 7" /protein_id="AAH51788.1" /db_xref="GeneID:56099" /db_xref="HGNC:HGNC:8714" /db_xref="MIM:606304" /translation="MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKG SVVGNLAKDLGLSVLDVSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRC ELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDP DISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGG DPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSE ITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVI VEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPF KIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAP VFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVS AQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPA LGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTG EVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPS DSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSKSGPVGP PNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLLASILTPSVEA DKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA GGNGNKKKSGKKEKK" BASE COUNT 1089 a 1373 c 1256 g 1026 t ORIGIN 1 agctcccaca cagaggctcc cggctgcgca gaccttgccc agcacaccag attgccagct 61 ccgagacccg ggactcctca tgtcctgggc cgaatgctct tttagcgcgg tagagtgcac 121 tttctccaac tggaaaagcg gggacccagc gagaacccga gcgaacgatg ggagggagct 181 gcgcgcagag gcgccgggcc ggcccgcggc aggtactatt tcctttgctg ctgcctttgt 241 tctaccccac gctgtgtgag ccgatccgct actcgattcc ggaggagctg gccaagggct 301 cggtggtggg gaacctcgct aaggatctag ggcttagtgt cctggatgtg tcggctcgcg 361 agctgcgagt tagcgcggag aagctgcact tcagcgtaga cgcgcagagc ggggacttac 421 ttgtgaagga ccgaatagac cgtgagcaaa tatgcaaaga gagaagaaga tgtgagttgc 481 aattggaagc tgtggtggaa aatcctttaa atatttttca tgtcattgtg gtgattgagg 541 atgttaatga ccacgcccct caattccgga aagatgaaat aaacttagaa atcagtgaat 601 ccgtcagcct ggggatggga acaattcttg agtctgcaga agatcctgat attagtatga 661 attcgctgag caaataccaa ctaagtccta acgagtattt ctcattggtg gagaaagaca 721 atcctgatgg tggcaaatat ccagaattag tattgcagaa gactctggac cgagaaacgc 781 agagcgctca ccacttggta ctgaccgcct tagatggtgg ggaccctccc cgaagcggta 841 ctgctcagat aagaatcctg gtaatagatg ccaatgacaa ccccccagtg ttcagccagg 901 acgtgtacag ggttagcctt cgggaagacg tgcctccagg cacctccatc ctgagagtga 961 aggccactga ccaggacgag ggcatcaact cagagatcac ttattccttc tttggtgtgg 1021 ctgacaaagc tcagcacgtg ttctctctgg attacactac aggaaacatt ctaactcagc 1081 agcctttgga ttttgaagaa gtagaaagat atacgataaa catagaagca aaagaccgag 1141 gatctctctc aacacggtgt aaagtaattg tagaagttgt agacgaaaac gacaacagcc 1201 cagaaataat catcacgtca ctctctgatc agattatgga ggattcccct ccaggagtgg 1261 ttgttgccct cttcaaaaca cgggaccaag actcagggga aaatggggaa gtcaggtgta 1321 gcttaagtag aggtgttcca tttaagattc attcttcttc taataattac tacaagctag 1381 taacagatga ggccctggat cgggagcaga ccccagagta caacgtcacc atcgcagcca 1441 cagacagggg caagcctccg ttatcctcca gcaaaaccat aaccctgcac attactgacg 1501 tcaatgacaa cgcgccggtt ttcggacagt cagcctacct ggtccacgtg ccagaaaaca 1561 accagccggg tgcctccata gcgcaagtca gtgcctctga cccagacttc gggctcaacg 1621 gccgtgtctc ctactctctc attgccagcg acctggagtc acgaacgctg tcgtcctacg 1681 tgtccgtgag cgcgcagagc ggggtggtgt tcgcgcagcg cgccttcgac cacgagcagc 1741 tgcgcacctt cgagctcacg ctgcaggccc gcgaccaggg ctcgcccgcg ctcagcgcca 1801 atgtgagcct gcgcgtgttg gtgggcgacc gtaacgacaa cgcaccgcgg gtgctgtacc 1861 ctgcgctggg tcccgacggc tccgcgctct tcgacacagt gccgcgggcc gcgcagccag 1921 gctacctggt gaccaaggtg gtggccgtgg acgcggactc ggggcacaat gcctggctgt 1981 cctaccacgt ggtgcaggcc agtgagcccg ggctcttcag cctggggctg cgaacaggcg 2041 aggtgcgcat ggtgcgtgct ttgggtgaca aggactcggt ccgccagcgc ctgctagtcg 2101 ctgtaagaga tggaggacag ccaccccttt cagccactgc cacgctgcac ctggtgttcg 2161 cagatagctt gcaagaggta ctgccggatt tcagcgacca tcccacaccc tctgactccc 2221 aggctgagat gcagttttac ctggtggtgg ccttggcctt gatttctgtg ctctttctcc 2281 tcgcggtgat tctagctatt gctctacgcc tgcgacagtc tttcagccct actgcaggag 2341 actgctttga gtcagttctc tgctccaagt ccggacctgt gggtcccccc aactacagtg 2401 agggaacgtt gccctatgcc tataattttt gtgtgcctgg ggatcaaatg aatccagaat 2461 ttaatttttt cacatctgtt gatcattgtc cagccacaca agataacctc aacaaagata 2521 gcatgctact ggctagcatt ttaactccca gcgttgaagc agataagaag attcttaaac 2581 agcaagcccc gcccaacacg gactggcgtt tctctcaggc ccagagaccc ggcaccagcg 2641 gctcccaaaa tggcgatgac accggcacct ggcccaacaa ccagtttgac acagagatgc 2701 tgcaagccat gatcttggcg tccgccagtg aagctgctga tgggagctcc accctgggag 2761 ggggtgccgg caccatggga ttgagcgccc gctacggacc ccagttcacc ctgcagcacg 2821 tgcccgacta ccgccagaat gtctacatcc caggcagcaa tgccacactg accaacgcag 2881 ctggcaagcg ggatggcaag gccccagcag gtggcaatgg caacaagaag aagtcgggca 2941 agaaggagaa gaagtaacat ggaggccagg ccaagagcca cagggcagcc tctccccaac 3001 cagcccagct tctccttacc tgcacccagg cctcagagtt tcagggctaa cccccagaat 3061 actggtaggg gccaaggcca tgctcccctt gggaaacaga aacaagtgcc cagtcagcac 3121 ctaccccttc ccccccaggg ggttgaatat gcaaaagcag ttccgctggg aacccccatc 3181 caatcaactg ctgtacccat gggggtagtg gggttactgt agacaccaag aaccatttgc 3241 cacaccccgt ttagttacag ctgaactcct ccatcttcca aatcaatcag gcccatccat 3301 cccatgcctc cctcctcccc accccactcc aacagttcct ctttcccgag taaggtggtt 3361 ggggtgttga agtaccaagt aacctacaag cctcctagtt ctgaaaagtt ggaagggcat 3421 catgacctct tggcctctcc tttgattctc aatcttcccc caaagcatgg tttggtgcca 3481 gccccttcac ctccttccag agcccaagat caatgctcaa gttttggagg acatgatcac 3541 catccccatg gtactgatgc ttgctggatt tagggagggc attttgctac caagcctctt 3601 cccaacgccc tggggaccag tcttctgttt tgtttttcat tgtttgacgt ttccactgca 3661 tgccttgact tcccccacct cctcctcaaa caagagactc cactgcatgt tccaagacag 3721 tatggggtgg taagataagg aagggaagtg tgtggatgtg gatggtgggg gcatggacaa 3781 agcttgacac atcaagttat caaggccttg gaggaggctc tgtatgtcct caggggactg 3841 acaacatcct ccagattcca gccataaacc aataactagg ctggaccctt cccactacat 3901 aatagggctc agcccaggca gccagctttg ggctgagcta acaggaccaa tggattaaac 3961 tggcatttca gtccaaggaa gctcgaagca ggtttaggac caggtcccct tgagaggtca 4021 gaggggcctc tgtgggtgct gggtactcca gaggtgccac tggtggaagg gtcagcggag 4081 ccccagcagg aagggtgggc cagccaggcc attcttagtc cctgggttgg ggaggcaggg 4141 agctagggca gggaccaaat gaacagaaag tctcagccca ggatggggct tcttcaacag 4201 ggcccctgcc ctcctgaagc ctcagtcctt caccttgcca ggtgccgttt ctcttccgtg 4261 aaggccactg cccaggtccc cagtgcgccc cctagtggcc atagcctggt taaagttccc 4321 cagtgcctcc ttgtgcatag accttcttct cccaccccct tctgcccctg ggtccccggc 4381 catccagcgg ggctgccaga gaaccccaga cctgccctta cagtagtgta gcgccccctc 4441 cctctttcgg ctggtgtaga atagccagta gtgtagtgcg gtgtgctttt acgtgatggc 4501 gggtgggcag cgggcggcgg gctccgcgca gccgtctgtc cttgatctgc ccgcggcggc 4561 ccgtgttgtg ttttgtgctg tgtccacgcg ctaaggcgac cccctccccc gtactgactt 4621 ctcctataag cgcttctctt cgcatagtca cgtagctccc accccaccct cttcctgtgt 4681 ctcacgcaag ttttatactc taatatttat atggcttttt ttcttcgaca aaaaaaaaaa 4741 aaaa //