LOCUS BC051788 4744 bp mRNA linear HUM 19-JAN-2018
DEFINITION Homo sapiens protocadherin gamma subfamily B, 7, mRNA (cDNA clone
MGC:57549 IMAGE:4941167), complete cds.
ACCESSION BC051788
VERSION BC051788.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4744)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4744)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 4744)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2018) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Jan 19, 2018 this sequence version replaced BC051788.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14270506.
FEATURES Location/Qualifiers
source 1..4744
/db_xref="H-InvDB:HIT000053681"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57549 IMAGE:4941167"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4744
/gene="PCDHGB7"
/gene_synonym="ME6"
/gene_synonym="PCDH-GAMMA-B7"
/db_xref="GeneID:56099"
/db_xref="HGNC:HGNC:8714"
/db_xref="MIM:606304"
CDS 168..2957
/gene="PCDHGB7"
/gene_synonym="ME6"
/gene_synonym="PCDH-GAMMA-B7"
/codon_start=1
/product="protocadherin gamma subfamily B, 7"
/protein_id="AAH51788.1"
/db_xref="GeneID:56099"
/db_xref="HGNC:HGNC:8714"
/db_xref="MIM:606304"
/translation="MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKG
SVVGNLAKDLGLSVLDVSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRC
ELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDP
DISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGG
DPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSE
ITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVI
VEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPF
KIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAP
VFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVS
AQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPA
LGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTG
EVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPS
DSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSKSGPVGP
PNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLLASILTPSVEA
DKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA
ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
GGNGNKKKSGKKEKK"
BASE COUNT 1089 a 1373 c 1256 g 1026 t
ORIGIN
1 agctcccaca cagaggctcc cggctgcgca gaccttgccc agcacaccag attgccagct
61 ccgagacccg ggactcctca tgtcctgggc cgaatgctct tttagcgcgg tagagtgcac
121 tttctccaac tggaaaagcg gggacccagc gagaacccga gcgaacgatg ggagggagct
181 gcgcgcagag gcgccgggcc ggcccgcggc aggtactatt tcctttgctg ctgcctttgt
241 tctaccccac gctgtgtgag ccgatccgct actcgattcc ggaggagctg gccaagggct
301 cggtggtggg gaacctcgct aaggatctag ggcttagtgt cctggatgtg tcggctcgcg
361 agctgcgagt tagcgcggag aagctgcact tcagcgtaga cgcgcagagc ggggacttac
421 ttgtgaagga ccgaatagac cgtgagcaaa tatgcaaaga gagaagaaga tgtgagttgc
481 aattggaagc tgtggtggaa aatcctttaa atatttttca tgtcattgtg gtgattgagg
541 atgttaatga ccacgcccct caattccgga aagatgaaat aaacttagaa atcagtgaat
601 ccgtcagcct ggggatggga acaattcttg agtctgcaga agatcctgat attagtatga
661 attcgctgag caaataccaa ctaagtccta acgagtattt ctcattggtg gagaaagaca
721 atcctgatgg tggcaaatat ccagaattag tattgcagaa gactctggac cgagaaacgc
781 agagcgctca ccacttggta ctgaccgcct tagatggtgg ggaccctccc cgaagcggta
841 ctgctcagat aagaatcctg gtaatagatg ccaatgacaa ccccccagtg ttcagccagg
901 acgtgtacag ggttagcctt cgggaagacg tgcctccagg cacctccatc ctgagagtga
961 aggccactga ccaggacgag ggcatcaact cagagatcac ttattccttc tttggtgtgg
1021 ctgacaaagc tcagcacgtg ttctctctgg attacactac aggaaacatt ctaactcagc
1081 agcctttgga ttttgaagaa gtagaaagat atacgataaa catagaagca aaagaccgag
1141 gatctctctc aacacggtgt aaagtaattg tagaagttgt agacgaaaac gacaacagcc
1201 cagaaataat catcacgtca ctctctgatc agattatgga ggattcccct ccaggagtgg
1261 ttgttgccct cttcaaaaca cgggaccaag actcagggga aaatggggaa gtcaggtgta
1321 gcttaagtag aggtgttcca tttaagattc attcttcttc taataattac tacaagctag
1381 taacagatga ggccctggat cgggagcaga ccccagagta caacgtcacc atcgcagcca
1441 cagacagggg caagcctccg ttatcctcca gcaaaaccat aaccctgcac attactgacg
1501 tcaatgacaa cgcgccggtt ttcggacagt cagcctacct ggtccacgtg ccagaaaaca
1561 accagccggg tgcctccata gcgcaagtca gtgcctctga cccagacttc gggctcaacg
1621 gccgtgtctc ctactctctc attgccagcg acctggagtc acgaacgctg tcgtcctacg
1681 tgtccgtgag cgcgcagagc ggggtggtgt tcgcgcagcg cgccttcgac cacgagcagc
1741 tgcgcacctt cgagctcacg ctgcaggccc gcgaccaggg ctcgcccgcg ctcagcgcca
1801 atgtgagcct gcgcgtgttg gtgggcgacc gtaacgacaa cgcaccgcgg gtgctgtacc
1861 ctgcgctggg tcccgacggc tccgcgctct tcgacacagt gccgcgggcc gcgcagccag
1921 gctacctggt gaccaaggtg gtggccgtgg acgcggactc ggggcacaat gcctggctgt
1981 cctaccacgt ggtgcaggcc agtgagcccg ggctcttcag cctggggctg cgaacaggcg
2041 aggtgcgcat ggtgcgtgct ttgggtgaca aggactcggt ccgccagcgc ctgctagtcg
2101 ctgtaagaga tggaggacag ccaccccttt cagccactgc cacgctgcac ctggtgttcg
2161 cagatagctt gcaagaggta ctgccggatt tcagcgacca tcccacaccc tctgactccc
2221 aggctgagat gcagttttac ctggtggtgg ccttggcctt gatttctgtg ctctttctcc
2281 tcgcggtgat tctagctatt gctctacgcc tgcgacagtc tttcagccct actgcaggag
2341 actgctttga gtcagttctc tgctccaagt ccggacctgt gggtcccccc aactacagtg
2401 agggaacgtt gccctatgcc tataattttt gtgtgcctgg ggatcaaatg aatccagaat
2461 ttaatttttt cacatctgtt gatcattgtc cagccacaca agataacctc aacaaagata
2521 gcatgctact ggctagcatt ttaactccca gcgttgaagc agataagaag attcttaaac
2581 agcaagcccc gcccaacacg gactggcgtt tctctcaggc ccagagaccc ggcaccagcg
2641 gctcccaaaa tggcgatgac accggcacct ggcccaacaa ccagtttgac acagagatgc
2701 tgcaagccat gatcttggcg tccgccagtg aagctgctga tgggagctcc accctgggag
2761 ggggtgccgg caccatggga ttgagcgccc gctacggacc ccagttcacc ctgcagcacg
2821 tgcccgacta ccgccagaat gtctacatcc caggcagcaa tgccacactg accaacgcag
2881 ctggcaagcg ggatggcaag gccccagcag gtggcaatgg caacaagaag aagtcgggca
2941 agaaggagaa gaagtaacat ggaggccagg ccaagagcca cagggcagcc tctccccaac
3001 cagcccagct tctccttacc tgcacccagg cctcagagtt tcagggctaa cccccagaat
3061 actggtaggg gccaaggcca tgctcccctt gggaaacaga aacaagtgcc cagtcagcac
3121 ctaccccttc ccccccaggg ggttgaatat gcaaaagcag ttccgctggg aacccccatc
3181 caatcaactg ctgtacccat gggggtagtg gggttactgt agacaccaag aaccatttgc
3241 cacaccccgt ttagttacag ctgaactcct ccatcttcca aatcaatcag gcccatccat
3301 cccatgcctc cctcctcccc accccactcc aacagttcct ctttcccgag taaggtggtt
3361 ggggtgttga agtaccaagt aacctacaag cctcctagtt ctgaaaagtt ggaagggcat
3421 catgacctct tggcctctcc tttgattctc aatcttcccc caaagcatgg tttggtgcca
3481 gccccttcac ctccttccag agcccaagat caatgctcaa gttttggagg acatgatcac
3541 catccccatg gtactgatgc ttgctggatt tagggagggc attttgctac caagcctctt
3601 cccaacgccc tggggaccag tcttctgttt tgtttttcat tgtttgacgt ttccactgca
3661 tgccttgact tcccccacct cctcctcaaa caagagactc cactgcatgt tccaagacag
3721 tatggggtgg taagataagg aagggaagtg tgtggatgtg gatggtgggg gcatggacaa
3781 agcttgacac atcaagttat caaggccttg gaggaggctc tgtatgtcct caggggactg
3841 acaacatcct ccagattcca gccataaacc aataactagg ctggaccctt cccactacat
3901 aatagggctc agcccaggca gccagctttg ggctgagcta acaggaccaa tggattaaac
3961 tggcatttca gtccaaggaa gctcgaagca ggtttaggac caggtcccct tgagaggtca
4021 gaggggcctc tgtgggtgct gggtactcca gaggtgccac tggtggaagg gtcagcggag
4081 ccccagcagg aagggtgggc cagccaggcc attcttagtc cctgggttgg ggaggcaggg
4141 agctagggca gggaccaaat gaacagaaag tctcagccca ggatggggct tcttcaacag
4201 ggcccctgcc ctcctgaagc ctcagtcctt caccttgcca ggtgccgttt ctcttccgtg
4261 aaggccactg cccaggtccc cagtgcgccc cctagtggcc atagcctggt taaagttccc
4321 cagtgcctcc ttgtgcatag accttcttct cccaccccct tctgcccctg ggtccccggc
4381 catccagcgg ggctgccaga gaaccccaga cctgccctta cagtagtgta gcgccccctc
4441 cctctttcgg ctggtgtaga atagccagta gtgtagtgcg gtgtgctttt acgtgatggc
4501 gggtgggcag cgggcggcgg gctccgcgca gccgtctgtc cttgatctgc ccgcggcggc
4561 ccgtgttgtg ttttgtgctg tgtccacgcg ctaaggcgac cccctccccc gtactgactt
4621 ctcctataag cgcttctctt cgcatagtca cgtagctccc accccaccct cttcctgtgt
4681 ctcacgcaag ttttatactc taatatttat atggcttttt ttcttcgaca aaaaaaaaaa
4741 aaaa
//