LOCUS BC051764 4241 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens damage-specific DNA binding protein 1, 127kDa, mRNA (cDNA clone MGC:54119 IMAGE:6063274), complete cds. ACCESSION BC051764 VERSION BC051764.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4241) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4241) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC051764.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 98 Row: k Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13435358. FEATURES Location/Qualifiers source 1..4241 /db_xref="H-InvDB:HIT000053674" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:54119 IMAGE:6063274" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4241 /gene="DDB1" /gene_synonym="DDBA" /gene_synonym="UV-DDB1" /gene_synonym="XAP1" /gene_synonym="XPCE" /gene_synonym="XPE" /gene_synonym="XPE-BF" /db_xref="GeneID:1642" /db_xref="HGNC:HGNC:2717" /db_xref="MIM:600045" CDS 128..3550 /gene="DDB1" /gene_synonym="DDBA" /gene_synonym="UV-DDB1" /gene_synonym="XAP1" /gene_synonym="XPCE" /gene_synonym="XPE" /gene_synonym="XPE-BF" /codon_start=1 /product="damage-specific DNA binding protein 1, 127kDa" /protein_id="AAH51764.1" /db_xref="GeneID:1642" /db_xref="HGNC:HGNC:2717" /db_xref="MIM:600045" /translation="MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV TAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIIT RAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE ELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASM VIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDM EGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV KLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRN GIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMG FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQV VVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISA RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPL NSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG KLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYL KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLF GTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGF IDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH" BASE COUNT 999 a 1062 c 1142 g 1038 t ORIGIN 1 gtgtctctgg ggcggaggca gcggcagtgg agttcgctgc gcgctgttgg gggccacctg 61 tcttttcgct tgtgtccctc tttctagtgt cgcgctcgag tcccgacggg ccgctccaag 121 cctcgacatg tcgtacaact acgtggtaac ggcccagaag cccaccgccg tgaacggctg 181 cgtgaccgga cactttactt cggccgaaga cttaaacctg ttgattgcca aaaacacgag 241 attagagatc tatgtggtca ccgccgaggg gcttcggccc gtcaaagagg tgggcatgta 301 tgggaagatt gcggtcatgg agcttttcag gcccaagggg gagagcaagg acctgctgtt 361 tatcttgaca gcgaagtaca atgcctgcat cctggagtat aaacagagtg gcgagagcat 421 tgacatcatt acgcgagccc atggcaatgt ccaggaccgc attggccgcc cctcagagac 481 cggcattatt ggcatcattg accctgagtg ccggatgatt ggcctgcgtc tctatgatgg 541 ccttttcaag gttattccac tagatcgcga taataaagaa ctcaaggcct tcaacatccg 601 cctggaggag ctgcatgtca ttgatgtcaa gttcctatat ggttgccaag cacctactat 661 ttgctttgtc taccaggacc ctcaggggcg gcacgtaaaa acctatgagg tgtctctccg 721 agaaaaggaa ttcaataagg gcccttggaa acaggaaaat gtcgaagctg aagcttccat 781 ggtgatcgca gtcccagagc cctttggggg ggccatcatc attggacagg agtcaatcac 841 ctatcacaat ggtgacaaat acctggctat tgcccctcct atcatcaagc aaagcacgat 901 tgtgtgccac aatcgagtgg accctaatgg ctcaagatac ctgctgggag acatggaagg 961 ccggctcttc atgctgcttt tggagaagga ggaacagatg gatggcaccg tcactctcaa 1021 ggatctccgt gtagaactcc ttggagagac ctctattgct gagtgcttga cataccttga 1081 taatggtgtt gtgtttgtcg ggtctcgcct gggtgactcc cagcttgtga agctcaacgt 1141 tgacagtaat gaacaaggct cctatgtagt ggccatggaa acctttacca acttaggacc 1201 cattgtcgat atgtgcgtgg tggacctgga gaggcagggg caggggcagc tggtcacttg 1261 ctctggggct ttcaaggaag gttctttgcg gatcatccgg aatggaattg gaatccacga 1321 gcatgccagc attgacttac caggcatcaa aggattatgg ccactgcggt ctgaccctaa 1381 tcgtgagact gatgacactt tggtgctctc ttttgtgggc cagacaagag ttctcatgtt 1441 aaatggagag gaggtagaag aaaccgaact gatgggtttc gtggatgatc agcagacttt 1501 cttctgtggc aacgtggctc atcagcagct tatccagatc acttcagcat cggtgaggtt 1561 ggtctctcaa gaacccaaag ctctggtcag tgaatggaag gagcctcagg ccaagaacat 1621 cagtgtggcc tcctgcaata gcagccaggt ggtggtggct gtaggcaggg ccctctacta 1681 tctgcagatc catcctcagg agctccggca gatcagccac acagagatgg aacatgaagt 1741 ggcttgcttg gacatcaccc cattaggaga cagcaatgga ctgtcccctc tttgtgccat 1801 tggcctctgg acggacatct cggctcgtat cttgaagttg ccctcttttg aactactgca 1861 caaggagatg ctgggtggag agatcattcc tcgctccatc ctgatgacca cctttgagag 1921 tagccattac ctcctttgtg ccttgggaga tggagcgctt ttctactttg ggctcaacat 1981 tgagacaggt ctgttgagcg accgtaagaa ggtgactttg ggcacccagc ccaccgtatt 2041 gaggactttt cgttctcttt ctaccaccaa cgtctttgct tgttctgacc gccccactgt 2101 catctatagc agcaaccaca aattggtctt ctcaaatgtc aacctcaagg aagtgaacta 2161 catgtgtccc ctcaattcag atggctatcc tgacagcctg gcgctggcca acaatagcac 2221 cctcaccatt ggcaccatcg atgagatcca gaagctgcac attcgcacag ttcccctcta 2281 tgagtctcca aggaagatct gctaccagga agtgtcccag tgtttcgggg tcctctccag 2341 ccgcattgaa gtccaagaca cgagtggggg cacgacagcc ttgaggccca gcgctagcac 2401 ccaggctctg tccagcagtg taagctccag caagctgttc tccagcagca ctgctcctca 2461 tgagacctcc tttggagaag aggtggaggt gcacaaccta cttatcattg accaacacac 2521 ctttgaagtg cttcatgccc accagtttct gcagaatgaa tatgccctca gtctggtttc 2581 ctgcaagctg ggcaaagacc ccaacactta cttcattgtg ggcacagcaa tggtgtatcc 2641 tgaagaggca gagcccaagc agggtcgcat tgtggtcttt cagtattcgg atggaaaact 2701 acagactgtg gctgaaaagg aagtgaaagg ggccgtgtac tctatggtgg aatttaacgg 2761 gaagctgtta gccagcatca atagcacggt gcggctctat gagtggacaa cagagaagga 2821 gctgcgcact gagtgcaacc actacaacaa catcatggcc ctctacctga agaccaaggg 2881 cgacttcatc ctggtgggcg accttatgcg ctcagtgctg ctgcttgcct acaagcccat 2941 ggaaggaaac tttgaagaga ttgctcgaga ctttaatccc aactggatga gtgctgtgga 3001 aatcttggat gatgacaatt ttctgggggc tgaaaatgcc tttaacttgt ttgtgtgtca 3061 aaaggatagc gctgccacca ctgacgagga gcggcagcac ctccaggagg ttggtctttt 3121 ccacctgggc gagtttgtca atgtcttttg ccacggctct ctggtaatgc agaatctggg 3181 tgagacttcc acccccacac aaggctcggt gctcttcggc acggtcaacg gcatgatagg 3241 gctggtgacc tcactgtcag agagctggta caacctcctg ctggacatgc agaatcgact 3301 caataaagtc atcaaaagtg tggggaagat cgagcactcc ttctggagat cctttcacac 3361 cgagcggaag acagaaccag ccacaggttt catcgacggt gacttgattg agagtttcct 3421 ggatattagc cgccccaaga tgcaggaggt ggtggcaaac ctacagtatg acgatggcag 3481 cggtatgaag cgagaggcca ctgcagacga cctcatcaag gttgtggagg agctaactcg 3541 gatccattag ccaagggcag ggggcccctt tgctgaccct ccccaaaggc tttgccctgc 3601 tgccctcccc ctcctctcca ccatcgtctt cttggccatg ggaggccttt ccctaagcca 3661 gctgccccca gagccacagt tcccctatgt ggaagtgggg cgggcttcat agagacttgg 3721 gaatgagctg aaggtgaaac attttctccc tggattttta ccagtctcac atgattccag 3781 ccatcacctt agaccaccaa gccttgattg gtgttgccag ttgtcctcct tccggggaag 3841 gattttgcag ttctttggct gaaaggaagc tgtgcgtgtg tgtgtgtgta tgtgtgtgtg 3901 tgtatgtgta tctcacactc atgcattgtc ctctttttat ttagattggc agtgtaggga 3961 gttgtgggta gtggggaaga gggttaggag ggtttcattg tctgtgaagt gagaccttcc 4021 ttttactttt cttctattgc ctctgagagc atcaggccta gaggcctgac tgccaagcca 4081 tgggtagcct gggtgtaaaa cctggagatg gtggatgatc cccacgccac agcccttttg 4141 tctctgcaaa ctgccttctt cggaaagaag aaggtgggag gatgtgaatt gttagtttct 4201 gagttttacc aaataaagta gaatataaaa aaaaaaaaaa a //