LOCUS BC051716 4304 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RUN and FYVE domain containing 3, mRNA (cDNA clone
MGC:48314 IMAGE:5265230), complete cds.
ACCESSION BC051716
VERSION BC051716.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4304)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4304)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281576.
FEATURES Location/Qualifiers
source 1..4304
/db_xref="H-InvDB:HIT000053661"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48314 IMAGE:5265230"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4304
/gene="RUFY3"
/gene_synonym="KIAA0871"
/gene_synonym="RIPX"
/db_xref="GeneID:22902"
/db_xref="HGNC:HGNC:30285"
CDS 601..2010
/gene="RUFY3"
/gene_synonym="KIAA0871"
/gene_synonym="RIPX"
/codon_start=1
/product="RUN and FYVE domain containing 3"
/protein_id="AAH51716.1"
/db_xref="GeneID:22902"
/db_xref="HGNC:HGNC:30285"
/translation="MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRE
LDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ
QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPV
GRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVI
DANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNA
TVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQD
RTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALV
SLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL
VKQAKTLNSAANKLIPKHH"
BASE COUNT 1374 a 766 c 866 g 1298 t
ORIGIN
1 cgttttggtc aacaccctgc ttactgcgca cggccaatcc tatgagaact cagcatccca
61 gctcatctga gcagatcctg gaagtgattt ctgcagctca ggattttttt tttaagctac
121 attgaaaata taggtttatt ttttgttcag gtttttcttt tatatttttt ttctgcacaa
181 aggaggagga tttttcactt actcatatcg aggccagatt tttaaagcca gctaaggcag
241 catcagctgt gcgggattta aagcctatag ctcagctgaa aaaaaaaggt ggggggcagg
301 gaagggaaga taaaaggaga ggaagctggg agaagacaag catcatctta ttttgctatg
361 tggtaggaac tgtctataag atagtgtaga attgtttatc ttgagcagtt tgttcttaac
421 ctataaggta tttttccttt tttttttttt tttttaaacc tcccccaccc ttttcctgaa
481 agctttgttt cagagctttg tattgggttt ttttggtgag gaggttgtat ttattttttt
541 ggtgtgtgtg tgtgagtgtg tgtgtgtctg tgtgtgtgtt gtggtcccag ctgagtcatc
601 atgtctgctc tgacgcctcc gaccgatatg ccaaccccca ccactgacaa gatcacacag
661 gctgccatgg agaccatcta cctttgcaaa ttccgagtgt ccatggatgg agaatggctc
721 tgcctgcgag agctggatga catctcactt acacctgacc cagagcctac ccatgaagat
781 cctaattatc tcatggctaa tgaacgcatg aacctcatga acatggccaa gctgagtatc
841 aagggcttga ttgaatcagc tctgaacctg gggaggactc ttgactctga ctatgcacct
901 ctccagcaat tctttgtggt gatggagcac tgtctgaaac atggcttgaa agctaaaaaa
961 acttttctcg gacaaaataa atccttctgg gggcctctag aactggtaga aaagcttgtt
1021 ccagaagccg cagagataac agcaagtgtt aaagatcttc caggacttaa gacaccagta
1081 ggtagaggaa gagcctggct tcgtttggca ttaatgcaaa agaaactttc agaatatatg
1141 aaagctttga tcaataagaa agaacttctc agtgaattct acgaacccaa tgccctcatg
1201 atggaagaag aaggagccat aattgctggt ctgttggtgg gtctgaatgt cattgatgcc
1261 aatttctgta tgaaaggaga agacttggac tctcaggttg gagttataga tttttcaatg
1321 tatctcaagg acgggaacag cagtaaaggt actgaaggag acggtcagat tactgcaatt
1381 ctggaccaga agaactatgt agaagaactg aacagacatt tgaatgctac tgtaaacaac
1441 cttcaggcaa aagtagatgc attagaaaaa tccaacacta aactgacaga ggagcttgca
1501 gttgcaaaca acaggatcat taccttacaa gaagaaatgg aacgagttaa agaggaaagt
1561 tcctacatac tggaatccaa tcggaagggt cccaagcaag acagaactgc agaagggcaa
1621 gcactaagtg aagcaagaaa gcatttaaaa gaagagacac aattacgatt ggatgttgag
1681 aaagaactgg agatgcagat cagcatgagg caggagatgg aattggctat gaagatgctg
1741 gagaaggatg tctgtgagaa gcaggatgcc ctggtatctc ttcggcagca gctggatgac
1801 ctcagagctc tcaagcatga acttgccttt aagctgcaga gttcagactt aggagtaaaa
1861 cagaaaagtg aactaaacag tcgcttggaa gagaagacta atcagatggc tgctaccatt
1921 aaacaacttg aacaaagtga aaaggatttg gtgaaacagg caaagacctt aaatagtgca
1981 gcaaataaac tgatcccaaa acatcattag gcatttttaa gttggtcacg tcgcaagtcc
2041 gatatcacaa cttaattgta aaaggaagaa atctgaaagt tactacattt aagctctgat
2101 tctatataaa atgtcaccaa aaagttgact ttgaatttgt tggactttta aaaaaccagt
2161 tggaaatata ggttgggttt ttttcttatt gttttctccc cagggttaga aaaattggta
2221 taagttccta attaaaagct gaataaactt tgagaaatta tttctgagtt gaccaataaa
2281 taaaaatacc actttcttta aaaaagccta gggaattgaa gctctgtaca tatactaatg
2341 atgcctttac aacccagtcc ttgataatac cagattctcg gtgcattgtt catgtctgta
2401 tctgcaagcc tgttctgcca ttgcagtgtg atgaacatag aggtaactac catgtgaact
2461 tgaactcttc taaaatagtt ctgtgtctct tagaccatga ccccttttca cttttgttat
2521 ataggtttaa tccccaagcc aaggatagta cttagtattt cactacactt ctattctcag
2581 taaccaagat tgcttgcaac tttttttgcc ttggtgactt ttgaaaaaaa aagaaaagaa
2641 aaagcagcat ccttatattt ctttaaaata catagaaata aagttagtaa ttaggtaacc
2701 tatgataaca taataatgtg gacgcctggg gaaaccctcc tcatgtttgt catcttctac
2761 ctctgccatt ttcctgcaat tccgcttcct acttaggcag ttcagagaga acaattctaa
2821 taaaaacact cctctcctat taacaaaaaa tgatgcagta cccatttttc gtatcctgct
2881 tttcttatat tggagtaaaa aggacagggt atagacatga atgatgatat tctgcctggc
2941 ctgtcatttc ttacctggaa acatttactt aagagtttct gttacttttt gttcagatgg
3001 ggatttgcta aaggttctgg gaagctaata attgaattat tagaaaaaca tttcagaata
3061 ggaagtaaat gataaactta tattctttat tattatttag tacaaaaata gattcccagt
3121 agatatccac aagcaatatt agcagggctt ctgtttctaa gtgaccacag actaaccctt
3181 tctaggcttt aacattgtaa ataatcctat aaacagtttg attttttaag atgatttttg
3241 atttgaagag acaggcttta cataagcctt cattccttca aaaggtcctg acaaaatact
3301 tgggtttttt tctctttttt tcattctggt atgctttgca gcatttcagc tgctttggtg
3361 gggacacaga taaccccttc gcttccagct cttaaaattc tttatctttt tcttggcaaa
3421 accagaatta agagtgtaag atagattcca tgtgtgctta tataggtccc tgcacagatt
3481 ggacttgaac caaaattaag tccaaagaac atatgtttag accaacttca tggaagtgga
3541 agatcctgtg ctcttgaact tattttaatt cttataattt gcacctatat aaacaaagct
3601 cctactgtat tcttctcttc atcaaccttt tgtggtgatg ggttgccttt tctacgagca
3661 tttggaagga gtgatcaaat accgaaattg aactttctaa aacctacaca tagcatgcgt
3721 ttaaattcta ttatataaag ccccaagtgc tttaccttct aaaacatgct tctctatagg
3781 tgcaaagtta taagatatgt agaagaaaac atccatcaga atcttctgga gaatatggtc
3841 agagtcttaa acaggcccag tgctgagttc tttgtccact tagtcacaca tcttttgtgg
3901 gaatgggaaa ggaaggagac agccaaactc tgacaaaggc ttttccttat agaataaccc
3961 aaagcctagg tgagggttga tatataatgt cccatgattt aatatatgtg gtttggggga
4021 aaggacaaga aaaaactata attccacata taagaaggta gttgcccatt tacaagttcc
4081 agttatgtgt gtaaaacaga aaaattaagt accaaaccta ttaggaaatt tttttaaaaa
4141 gtggatttaa cttaaattac tgtgtacttg aggttggctt tggatatgga ttttctaaaa
4201 agtgatgttt tattgtttat catctaatgg ctgtaaactg tagtactaga ataaaaaaaa
4261 tggaaaatca aaaaaaaaaa aaaaaaagaa aaaaaaaaaa aaaa
//