LOCUS BC051716 4304 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens RUN and FYVE domain containing 3, mRNA (cDNA clone MGC:48314 IMAGE:5265230), complete cds. ACCESSION BC051716 VERSION BC051716.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4304) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4304) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 90 Row: p Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41281576. FEATURES Location/Qualifiers source 1..4304 /db_xref="H-InvDB:HIT000053661" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48314 IMAGE:5265230" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4304 /gene="RUFY3" /gene_synonym="KIAA0871" /gene_synonym="RIPX" /db_xref="GeneID:22902" /db_xref="HGNC:HGNC:30285" CDS 601..2010 /gene="RUFY3" /gene_synonym="KIAA0871" /gene_synonym="RIPX" /codon_start=1 /product="RUN and FYVE domain containing 3" /protein_id="AAH51716.1" /db_xref="GeneID:22902" /db_xref="HGNC:HGNC:30285" /translation="MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRE LDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPV GRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVI DANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNA TVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQD RTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALV SLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL VKQAKTLNSAANKLIPKHH" BASE COUNT 1374 a 766 c 866 g 1298 t ORIGIN 1 cgttttggtc aacaccctgc ttactgcgca cggccaatcc tatgagaact cagcatccca 61 gctcatctga gcagatcctg gaagtgattt ctgcagctca ggattttttt tttaagctac 121 attgaaaata taggtttatt ttttgttcag gtttttcttt tatatttttt ttctgcacaa 181 aggaggagga tttttcactt actcatatcg aggccagatt tttaaagcca gctaaggcag 241 catcagctgt gcgggattta aagcctatag ctcagctgaa aaaaaaaggt ggggggcagg 301 gaagggaaga taaaaggaga ggaagctggg agaagacaag catcatctta ttttgctatg 361 tggtaggaac tgtctataag atagtgtaga attgtttatc ttgagcagtt tgttcttaac 421 ctataaggta tttttccttt tttttttttt tttttaaacc tcccccaccc ttttcctgaa 481 agctttgttt cagagctttg tattgggttt ttttggtgag gaggttgtat ttattttttt 541 ggtgtgtgtg tgtgagtgtg tgtgtgtctg tgtgtgtgtt gtggtcccag ctgagtcatc 601 atgtctgctc tgacgcctcc gaccgatatg ccaaccccca ccactgacaa gatcacacag 661 gctgccatgg agaccatcta cctttgcaaa ttccgagtgt ccatggatgg agaatggctc 721 tgcctgcgag agctggatga catctcactt acacctgacc cagagcctac ccatgaagat 781 cctaattatc tcatggctaa tgaacgcatg aacctcatga acatggccaa gctgagtatc 841 aagggcttga ttgaatcagc tctgaacctg gggaggactc ttgactctga ctatgcacct 901 ctccagcaat tctttgtggt gatggagcac tgtctgaaac atggcttgaa agctaaaaaa 961 acttttctcg gacaaaataa atccttctgg gggcctctag aactggtaga aaagcttgtt 1021 ccagaagccg cagagataac agcaagtgtt aaagatcttc caggacttaa gacaccagta 1081 ggtagaggaa gagcctggct tcgtttggca ttaatgcaaa agaaactttc agaatatatg 1141 aaagctttga tcaataagaa agaacttctc agtgaattct acgaacccaa tgccctcatg 1201 atggaagaag aaggagccat aattgctggt ctgttggtgg gtctgaatgt cattgatgcc 1261 aatttctgta tgaaaggaga agacttggac tctcaggttg gagttataga tttttcaatg 1321 tatctcaagg acgggaacag cagtaaaggt actgaaggag acggtcagat tactgcaatt 1381 ctggaccaga agaactatgt agaagaactg aacagacatt tgaatgctac tgtaaacaac 1441 cttcaggcaa aagtagatgc attagaaaaa tccaacacta aactgacaga ggagcttgca 1501 gttgcaaaca acaggatcat taccttacaa gaagaaatgg aacgagttaa agaggaaagt 1561 tcctacatac tggaatccaa tcggaagggt cccaagcaag acagaactgc agaagggcaa 1621 gcactaagtg aagcaagaaa gcatttaaaa gaagagacac aattacgatt ggatgttgag 1681 aaagaactgg agatgcagat cagcatgagg caggagatgg aattggctat gaagatgctg 1741 gagaaggatg tctgtgagaa gcaggatgcc ctggtatctc ttcggcagca gctggatgac 1801 ctcagagctc tcaagcatga acttgccttt aagctgcaga gttcagactt aggagtaaaa 1861 cagaaaagtg aactaaacag tcgcttggaa gagaagacta atcagatggc tgctaccatt 1921 aaacaacttg aacaaagtga aaaggatttg gtgaaacagg caaagacctt aaatagtgca 1981 gcaaataaac tgatcccaaa acatcattag gcatttttaa gttggtcacg tcgcaagtcc 2041 gatatcacaa cttaattgta aaaggaagaa atctgaaagt tactacattt aagctctgat 2101 tctatataaa atgtcaccaa aaagttgact ttgaatttgt tggactttta aaaaaccagt 2161 tggaaatata ggttgggttt ttttcttatt gttttctccc cagggttaga aaaattggta 2221 taagttccta attaaaagct gaataaactt tgagaaatta tttctgagtt gaccaataaa 2281 taaaaatacc actttcttta aaaaagccta gggaattgaa gctctgtaca tatactaatg 2341 atgcctttac aacccagtcc ttgataatac cagattctcg gtgcattgtt catgtctgta 2401 tctgcaagcc tgttctgcca ttgcagtgtg atgaacatag aggtaactac catgtgaact 2461 tgaactcttc taaaatagtt ctgtgtctct tagaccatga ccccttttca cttttgttat 2521 ataggtttaa tccccaagcc aaggatagta cttagtattt cactacactt ctattctcag 2581 taaccaagat tgcttgcaac tttttttgcc ttggtgactt ttgaaaaaaa aagaaaagaa 2641 aaagcagcat ccttatattt ctttaaaata catagaaata aagttagtaa ttaggtaacc 2701 tatgataaca taataatgtg gacgcctggg gaaaccctcc tcatgtttgt catcttctac 2761 ctctgccatt ttcctgcaat tccgcttcct acttaggcag ttcagagaga acaattctaa 2821 taaaaacact cctctcctat taacaaaaaa tgatgcagta cccatttttc gtatcctgct 2881 tttcttatat tggagtaaaa aggacagggt atagacatga atgatgatat tctgcctggc 2941 ctgtcatttc ttacctggaa acatttactt aagagtttct gttacttttt gttcagatgg 3001 ggatttgcta aaggttctgg gaagctaata attgaattat tagaaaaaca tttcagaata 3061 ggaagtaaat gataaactta tattctttat tattatttag tacaaaaata gattcccagt 3121 agatatccac aagcaatatt agcagggctt ctgtttctaa gtgaccacag actaaccctt 3181 tctaggcttt aacattgtaa ataatcctat aaacagtttg attttttaag atgatttttg 3241 atttgaagag acaggcttta cataagcctt cattccttca aaaggtcctg acaaaatact 3301 tgggtttttt tctctttttt tcattctggt atgctttgca gcatttcagc tgctttggtg 3361 gggacacaga taaccccttc gcttccagct cttaaaattc tttatctttt tcttggcaaa 3421 accagaatta agagtgtaag atagattcca tgtgtgctta tataggtccc tgcacagatt 3481 ggacttgaac caaaattaag tccaaagaac atatgtttag accaacttca tggaagtgga 3541 agatcctgtg ctcttgaact tattttaatt cttataattt gcacctatat aaacaaagct 3601 cctactgtat tcttctcttc atcaaccttt tgtggtgatg ggttgccttt tctacgagca 3661 tttggaagga gtgatcaaat accgaaattg aactttctaa aacctacaca tagcatgcgt 3721 ttaaattcta ttatataaag ccccaagtgc tttaccttct aaaacatgct tctctatagg 3781 tgcaaagtta taagatatgt agaagaaaac atccatcaga atcttctgga gaatatggtc 3841 agagtcttaa acaggcccag tgctgagttc tttgtccact tagtcacaca tcttttgtgg 3901 gaatgggaaa ggaaggagac agccaaactc tgacaaaggc ttttccttat agaataaccc 3961 aaagcctagg tgagggttga tatataatgt cccatgattt aatatatgtg gtttggggga 4021 aaggacaaga aaaaactata attccacata taagaaggta gttgcccatt tacaagttcc 4081 agttatgtgt gtaaaacaga aaaattaagt accaaaccta ttaggaaatt tttttaaaaa 4141 gtggatttaa cttaaattac tgtgtacttg aggttggctt tggatatgga ttttctaaaa 4201 agtgatgttt tattgtttat catctaatgg ctgtaaactg tagtactaga ataaaaaaaa 4261 tggaaaatca aaaaaaaaaa aaaaaaagaa aaaaaaaaaa aaaa //