LOCUS BC051326 2294 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens POU class 6 homeobox 1, mRNA (cDNA clone MGC:59843
IMAGE:6275848), complete cds.
ACCESSION BC051326
VERSION BC051326.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2294)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2294)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57163992.
FEATURES Location/Qualifiers
source 1..2294
/db_xref="H-InvDB:HIT000099313"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59843 IMAGE:6275848"
/tissue_type="Salivary gland, epidermoid carcinoma"
/clone_lib="NIH_MGC_102"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2294
/gene="POU6F1"
/gene_synonym="BRN5"
/gene_synonym="MPOU"
/gene_synonym="TCFB1"
/db_xref="GeneID:5463"
/db_xref="HGNC:HGNC:9224"
CDS 286..1191
/gene="POU6F1"
/gene_synonym="BRN5"
/gene_synonym="MPOU"
/gene_synonym="TCFB1"
/codon_start=1
/product="POU class 6 homeobox 1"
/protein_id="AAH51326.2"
/db_xref="GeneID:5463"
/db_xref="HGNC:HGNC:9224"
/translation="MPGISSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVT
PQLLLNAQGQVIATLASSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQPAVVIAS
PAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLS
LGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQE
GQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDRE
VVRVWFCNRRQTLKNTSKLNVFQIP"
BASE COUNT 559 a 707 c 552 g 476 t
ORIGIN
1 gtacaggcct cctcgacggc ccaaccccgg ccaccagccc agccccagac gctgttccag
61 acccagccgc tgctgcagac cacacctgcc atcctcccgc agcccactgc tgccaccgct
121 gctgccccta cccccaagcc agtggacacc cccccacaga tcaccgtcca gcctgcaggc
181 ttcgcattta gcccaggaat catcagtgct gcttccctcg ggggacagac ccagatcctg
241 gggtccctca ctacagctcc agtcattacc agcgccattc ccagcatgcc agggatcagc
301 agtcagatcc tcaccaatgc tcagggacag gttattggaa cccttccatg ggtagtgaac
361 tcagctagtg tggcggcccc agcaccagcc caaagcctgc aggtccaggc cgtgaccccc
421 cagctgttgt tgaacgccca gggccaggtg attgcgaccc tggctagcag ccccctgcct
481 ccacctgtgg ctgtccggaa gccaagcaca cctgagtccc ctgctaagag tgaggtgcag
541 cccatccagc ccacaccaac cgtgccccag cctgctgtgg tcattgccag cccagctcca
601 gccgccaagc catctgcctc tgctcctatc ccaattacct gctcagagac ccccaccgtc
661 agccagttgg tgtccaagcc acatactcca agtctggatg aggatgggat caacttagaa
721 gagatccggg agtttgccaa gaactttaag atccggcggc tctcgctggg ccttacacag
781 acccaggtgg gtcaggctct gactgcaacg gaaggtccag cctacagcca gtcagccatc
841 tgccggttcg agaagctaga catcacaccc aagagtgccc agaagctaaa gccggtgctg
901 gaaaagtggc taaacgaagc tgaactgcgg aaccaggaag gccagcagaa cctgatggag
961 tttgtgggag gcgagccctc caagaaacgc aaacgccgca cctccttcac cccccaggcc
1021 atagaggctc tcaatgccta ttttgagaag aacccactgc ccacaggcca ggagatcact
1081 gaaattgcta aggagctcaa ctacgaccgt gaggtagtgc gggtctggtt ctgcaatcgg
1141 cgccagacgc tcaagaacac cagcaagctg aacgtctttc agatccctta gggctcagcc
1201 cctggccctg tgttctagca ctttgtccat ttcccgtggc atccggctgc agccactgcc
1261 atgacagcac ctgtcatttt gccacgtgca gctgtgctca ccccaggtca tcagactcca
1321 ccgtgtgcat gtgcatcaat gtccctcttt tctcccacac atctcacatc atggggaggc
1381 cagagggggc cacacgagag ctccaggctc tgggctggtc actccgaaga agaggatttg
1441 tgacgtcact tagagaagca ccttgctagc atggtttctg aagggtgaat tctggtgggg
1501 aaccagaaac tccctgtctt tggggcaggg ctaaagcagc tcctaaggac cactggccat
1561 tagctcttgc ttttgatggc attctctttc caccttgtct tctcctttgc tcctctgtgt
1621 tagtgtggca ggtatgacaa ctcatccagt ggaaacacag cctcacactg cccttccgcc
1681 ccccacattt tgcctgcagg tgcaccgaaa ggacctggga gataaaattc aaaaaagtgt
1741 gatgtgctgc tcagaaggtc agactccatg tctgccttga cctcaaggtc agaaggttcc
1801 caaacccctg gggctggaac atgggatctc ctcttccacc tcttcctggt tcctttgcgg
1861 ggaaaattgc actaaaacag aaccttttct taatccatgt tggaaggaag caacagtgaa
1921 ctctacctgt tctggagttc tcctgggtct gcagaaggtt gggaatttag aaaataaggc
1981 tgttctttca tattttaatt taatctctgt caatggccat ccctcccaca aaaaaacgtg
2041 ggttaagaga acttgcagac tggatatgca agcaaacggg caactctgga gaaaaataag
2101 gaaaggaatg ctgactttct ctttctttct cttgtcccca cacccattcc caacccaata
2161 ctggggcctt ctcaaaagga gcaaattaaa caataaacca gacagcaagg ccctggggga
2221 aaggacaaca tcctgaaata aatgatggag cccaggaagg tctcttgtgg aagttgaaaa
2281 aaaaaaaaaa aaaa
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