LOCUS BC051300 1171 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens phytanoyl-CoA dioxygenase domain containing 1, mRNA
(cDNA clone MGC:59991 IMAGE:4843267), complete cds.
ACCESSION BC051300
VERSION BC051300.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1171)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1171)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222242.
FEATURES Location/Qualifiers
source 1..1171
/db_xref="H-InvDB:HIT000053612"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59991 IMAGE:4843267"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1171
/gene="PHYHD1"
/gene_synonym="MGC16638"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
CDS 14..826
/gene="PHYHD1"
/gene_synonym="MGC16638"
/codon_start=1
/product="PHYHD1 protein"
/protein_id="AAH51300.1"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
/translation="MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMD
VPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINK
IGHALHAHDPVFKSITHSFKVQQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDAT
LENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVL
IHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT"
BASE COUNT 255 a 359 c 303 g 254 t
ORIGIN
1 cctgagcgtc tccatggcct gcctgagccc ctcgcagctc cagaagttcc aacaggatgg
61 attcctggtg ctggaaggat tcttgtctgc ggaagagtgt gtggccatgc aacaaaggat
121 tggcgagata gtggctgaaa tggatgttcc tctccactgc cgcacagaat tctccaccca
181 ggaagaggag cagcttcgag cccagggcag cacagactat ttcttgagca gtggtgacaa
241 gattcgattc ttctttgaga aaggcgtttt tgatgagaaa ggaaatttcc tggtccctcc
301 ggagaaatcc atcaacaaaa ttggccacgc tctgcacgcc cacgaccccg tcttcaagag
361 catcacacac tccttcaagg tgcagcaacc tcactttggc ggtgaagtct cccctcatca
421 ggacgcctcc ttcctgtaca cggagcccct gggccgggtg ctgggcgtgt ggatcgcagt
481 ggaggatgcc acgctggaga acggctgtct ctggttcatc cctggctccc acaccagtgg
541 tgtgtcaaga aggatggtcc gggcccctgt tggctcagcg cctggtacca gcttccttgg
601 gtcagagcca gcccgggata acagcctctt tgtgcccacc ccagtgcaga gaggggccct
661 ggtcctcatc catggagaag tggtacacaa gagcaagcag aacctctctg accgctcgcg
721 ccaggcctac actttccacc tcatggaggc ctctggcacc acctggagcc cggagaactg
781 gctccagcca acagctgaac tgccctttcc ccaactgtac acctaaaggc tctcgcaggg
841 caggagccct cgcccctccc gggtgaagct gtgggctgta aacaccagtg ccttgctcag
901 cctcctggtt gcaacaggga ggtcttgtct cccctcctgg gctttcctcc tgccctgtgg
961 gcagcagcct aggctgggtc aggggcttcc ctaagatctt cacctctctg cctccctact
1021 gccccaacat agccttgagg aggcttctca gccaccaaag ggttctggcc ccttctcact
1081 ctcctctcct ctcagatgga actctggtta ttatggtgtt agttatcgaa taaaaacgac
1141 ttcagaatgc aaaaaaaaaa aaaaaaaaaa a
//