LOCUS BC051279 1990 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens glypican 1, mRNA (cDNA clone MGC:59855 IMAGE:6275649),
complete cds.
ACCESSION BC051279
VERSION BC051279.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1990)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1990)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504080.
FEATURES Location/Qualifiers
source 1..1990
/db_xref="H-InvDB:HIT000053600"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59855 IMAGE:6275649"
/tissue_type="Salivary gland, epidermoid carcinoma"
/clone_lib="NIH_MGC_102"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1990
/gene="GPC1"
/db_xref="GeneID:2817"
/db_xref="HGNC:HGNC:4449"
/db_xref="MIM:600395"
CDS 222..1898
/gene="GPC1"
/codon_start=1
/product="glypican 1"
/protein_id="AAH51279.1"
/db_xref="GeneID:2817"
/db_xref="HGNC:HGNC:4449"
/db_xref="MIM:600395"
/translation="MELRARGWWLLCAAAALVACARGDPASKSRSCGEVRQIYGAKGF
SLSDVPQAEISGEHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLAT
QLRSFDDHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLHLE
ETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQAEALRPFGEAPRELRLRATRAFV
AARSFVQGLGVASDVVRKVAQVPLGPECSRAVMKLVYCAHCLGVPGARPCPDYCRNVL
KGCLANQADLDAEWRNLLDSMVLITDKFWGTSGVESVIGSVHTWLAEAINALQDNRDT
LTAKVIQGCGNPKVNPQGPGPEEKRRRGKLAPRERPPSGTLEKLVSEAKAQLRDVQDF
WISLPGTLCSEKMALSTASDDRCWNGMARGRYLPEVMGDGLANQINNPEVEVDITKPD
MTIRQQIMQLKIMTNRLRSAYNGNDVDFQDASDDGSGSGSGDGCLDDLCGRKVSRKSS
SSRTPLTHALPGLSEQEGQKTSAASCPQPPTFLLPLLLFLALTVARPRWR"
BASE COUNT 362 a 690 c 650 g 288 t
ORIGIN
1 ggctgcccga gcgagcgttc ggacctcgca ccccgcgcgc cccgcgccgc cgccgccgcc
61 ggcttttgtt gtctccgcct cctcggccgc cgccgcctct ggaccgcgag ccgcgcgcgc
121 cgggaccttg gctctgccct tcgcgggcgg gaactgcgca ggacccggcc aggatccgag
181 agaggcgcgg gcgggtggcc gggggcgccg ccggccccgc catggagctc cgggcccgag
241 gctggtggct gctatgtgcg gccgcagcgc tggtcgcctg cgcccgcggg gacccggcca
301 gcaagagccg gagctgcggc gaggtccgcc agatctacgg agccaagggc ttcagcctga
361 gcgacgtgcc ccaggcggag atctcgggtg agcacctgcg gatctgtccc cagggctaca
421 cctgctgcac cagcgagatg gaggagaacc tggccaaccg cagccatgcc gagctggaga
481 ccgcgctccg ggacagcagc cgcgtcctgc aggccatgct tgccacccag ctgcgcagct
541 tcgatgacca cttccagcac ctgctgaacg actcggagcg gacgctgcag gccaccttcc
601 ccggcgcctt cggagagctg tacacgcaga acgcgagggc cttccgggac ctgtactcag
661 agctgcgcct gtactaccgc ggtgccaacc tgcacctgga ggagacgctg gccgagttct
721 gggcccgcct gctcgagcgc ctcttcaagc agctgcaccc ccagctgctg ctgcctgatg
781 actacctgga ctgcctgggc aagcaggccg aggcgctgcg gcccttcggg gaggccccga
841 gagagctgcg cctgcgggcc acccgtgcct tcgtggctgc tcgctccttt gtgcagggcc
901 tgggcgtggc cagcgacgtg gtccggaaag tggctcaggt ccccctgggc ccggagtgct
961 cgagagctgt catgaagctg gtctactgtg ctcactgcct gggagtcccc ggcgccaggc
1021 cctgccctga ctattgccga aatgtgctca agggctgcct tgccaaccag gccgacctgg
1081 acgccgagtg gaggaacctc ctggactcca tggtgctcat caccgacaag ttctggggta
1141 catcgggtgt ggagagtgtc atcggcagcg tgcacacgtg gctggcggag gccatcaacg
1201 ccctccagga caacagggac acgctcacgg ccaaggtcat ccagggctgc gggaacccca
1261 aggtcaaccc ccagggccct gggcctgagg agaagcggcg ccggggcaag ctggccccgc
1321 gggagaggcc accttcaggc acgctggaga agctggtctc tgaagccaag gcccagctcc
1381 gcgacgtcca ggacttctgg atcagcctcc cagggacact gtgcagtgag aagatggccc
1441 tgagcactgc cagtgatgac cgctgctgga acgggatggc cagaggccgg tacctccccg
1501 aggtcatggg tgacggcctg gccaaccaga tcaacaaccc cgaggtggag gtggacatca
1561 ccaagccgga catgaccatc cggcagcaga tcatgcagct gaagatcatg accaaccggc
1621 tgcgcagcgc ctacaacggc aacgacgtgg acttccagga cgccagtgac gacggcagcg
1681 gctcgggcag cggtgatggc tgtctggatg acctctgcgg ccggaaggtc agcaggaaga
1741 gctccagctc ccggacgccc ttgacccatg ccctcccagg cctgtcagag caggaaggac
1801 agaagacctc ggctgccagc tgcccccagc ccccgacctt cctcctgccc ctcctcctct
1861 tcctggccct tacagtagcc aggccccggt ggcggtaact gccccaaggc cccagggaca
1921 gaggccaagg actgactttg ccaaaaatac aacacagacg atatttaatt caaaaaaaaa
1981 aaaaaaaaaa
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