LOCUS BC051264 2194 bp mRNA linear HUM 30-JUN-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 7, mRNA
(cDNA clone IMAGE:3636644), partial cds.
ACCESSION BC051264
VERSION BC051264.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2194)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2194)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: a Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2194
/db_xref="H-InvDB:HIT000099289"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3636644"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2194
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/db_xref="GeneID:55636"
CDS <1..1211
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/codon_start=3
/product="CHD7 protein"
/protein_id="AAH51264.1"
/db_xref="GeneID:55636"
/translation="KLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDIN
TLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPE
SMFDRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDL
TSLQNLQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLG
GLLNNPLSAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSAN
GSVGAATAPAGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQN
AVGSSEEKAADKAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGG
DEIENNENDE"
BASE COUNT 635 a 454 c 520 g 585 t
ORIGIN
1 tgaagctgca ccctacttac actgttgata tgccaagtta tgtaccaaag aatgcagatg
61 tgctgttttc ctcatttcag aaaccgaaac agaaacgaca tagatgtcga aaccctaata
121 aattggatat aaacactttg acaggagaag aaagggtgcc tgttgtcaat aaacgaaatg
181 ggaagaagat gggtggagct atggcgcctc caatgaagga tctacccagg tggctggaag
241 aaaatcctga atttgcagtt gctccagact ggactgatat agttaagcag tctggttttg
301 ttcctgagtc gatgtttgac cgccttctca ctgggcctgt agtgcgggga gagggagcga
361 gcagaagagg aagaaggccc aaaagtgaga tcgccagagc agccgcggcc gccgctgctg
421 tggcctccac gtcagggatc aaccctttgc tggtgaacag cctgtttgct ggaatggacc
481 tgacgagcct tcagaatctc cagaatctcc agtcgctcca gctggcaggc ctcatgggct
541 tccctccagg actggcaaca gctgccaccg ccggaggcga tgcgaagaac cctgctgctg
601 tgctgcccct gatgctgcca ggaatggcgg gcctgcccaa cgtgtttggc ttgggcgggc
661 tgttgaataa ccctctgtca gctgctactg gaaacaccac tactgcttct agtcaaggag
721 aaccggaaga cagcacttca aaaggagagg agaaaggaaa tgagaatgaa gacgagaaca
781 aagactctga gaaaagcaca gatgctgttt cggctgctga ctctgcgaat ggatctgttg
841 gtgctgctac tgccccggct ggattgccct caaacccgct agccttcaac cctttcctcc
901 tgtccacaat ggccccgggc ctcttctacc catccatgtt tctacctcca ggactggggg
961 gattgacgct gcctgggttc ccagcattgg caggacttca gaatgccgtg ggctccagcg
1021 aagaaaaggc tgctgacaag gctgagggag gaccctttaa agatggagag acccttgaag
1081 gcagcgatgc cgaggagagc ctggataaga ctgcagagtc ctccctctta gaagacgaaa
1141 tagcacaggg tgaagagcta gactcacttg atggggggga tgaaatagaa aacaatgaaa
1201 atgatgaata accagtacca gttccagttc aagtgtttaa aacttttgac aagtggtagt
1261 cctactgttt acactcacag ttaatgttca tacctagttt tataagctgt tctgtaacat
1321 agtgtagcaa aaaaaaaagt tcaagtcatg ttatacaggt gtgtcaaaag gtatcttggt
1381 cattaagtat tgtgcagtgc attatttatt atccctagga gagatgaaat ttgagaggtg
1441 atcatgtctt tttaaggaaa cttacataat gctctgcttt ttttttttct cttggtacca
1501 ttggtattat aataaagagc aatttgtaac tgagtggcac taatggaaga aagtgctgct
1561 caaaggaagt atgaagttat atatttaatt ttttaatttt aatttttaat ttttttgctg
1621 tgaaggtcaa gctgaaattt accatacata tcatacttgc tcatttgttt ccctttttga
1681 ctgtatgggg gttcccacac tcgtgcatac acacacatcc atacactctg acaatctcca
1741 cgctagtgtg aacgcctctg tcccgaggcg cagcaataat aaggcagctg ttgaatgtga
1801 agggtccctt tggaaaatta acctactggg agggttcttg ccagacagaa ctacagttcc
1861 attgtctcgt ggtcttgtaa tgcactggta aaaacaaaat aaatagatga ataaataaag
1921 agtgagagaa gagagaatca ggtacctttt ttaaattaaa ggactttgtt actttagcca
1981 caaagctaaa acagcattac ctcagctcta aactagcctt gaagtttaca gacatgactt
2041 tgtaaatgta ttgtttttct ttgttgtgat gtccttttat ttttttcttt gaaaactgct
2101 atcatgtaag ataaaatgta aattgctgcc aactgtagta atgatgcttt taataaaagt
2161 gacccatgat atgcaaaaaa aaaaaaaaaa aaaa
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