LOCUS BC050738 1640 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens cleavage and polyadenylation specific factor 4, 30kDa, mRNA (cDNA clone MGC:60384 IMAGE:6199123), complete cds. ACCESSION BC050738 VERSION BC050738.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1640) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1640) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: n Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5729938. FEATURES Location/Qualifiers source 1..1640 /db_xref="H-InvDB:HIT000053583" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:60384 IMAGE:6199123" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1640 /gene="CPSF4" /gene_synonym="CPSF30" /gene_synonym="NAR" /gene_synonym="NEB1" /db_xref="GeneID:10898" /db_xref="MIM:603052" CDS 107..838 /gene="CPSF4" /gene_synonym="CPSF30" /gene_synonym="NAR" /gene_synonym="NEB1" /codon_start=1 /product="CPSF4 protein" /protein_id="AAH50738.1" /db_xref="GeneID:10898" /db_xref="MIM:603052" /translation="MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF LKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKF GECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGP SCKFMHPRFELPMGTTEQPPLPQQTQPPAKRTPQVIGVMQSQNSSAGNRGPRPLEQVT CYKCGEKGHYANRCTKGHLAFLSGQ" misc_feature 179..622 /gene="CPSF4" /gene_synonym="CPSF30" /gene_synonym="NAR" /gene_synonym="NEB1" /note="YTH1; Region: COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]" /db_xref="CDD:COG5084" misc_feature 704..802 /gene="CPSF4" /gene_synonym="CPSF30" /gene_synonym="NAR" /gene_synonym="NEB1" /note="COG5222; Region: COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]" /db_xref="CDD:COG5222" BASE COUNT 407 a 416 c 470 g 347 t ORIGIN 1 ggcgaagcga aggaggagtg tgtgcggcgg ggccggcggc gggtaaaggc gagaaggctg 61 caggagaccg agggggagcc gggccggtgg ggccgccgcc gccgccatgc aggaaatcat 121 cgccagcgtg gaccacatca agtttgactt ggagatcgcg gtggagcagc agctgggggc 181 gcagccgctg cccttccccg gcatggacaa gtcgggcgct gctgtctgtg aattcttttt 241 gaaagctgcc tgcggcaaag ggggcatgtg tccgtttcgc cacatcagtg gtgagaagac 301 agttgtgtgc aaacactggc tgcgtggcct atgcaagaaa ggggaccagt gtgagttcct 361 gcatgagtat gacatgacca agatgcccga gtgctacttc tactccaagt tcggggagtg 421 cagcaacaag gaatgtccct tcctgcacat cgaccccgag tccaagatca aggactgtcc 481 ttggtatgac cgcggcttct gcaagcacgg tcccctctgc aggcaccggc acacacggag 541 agtcatctgt gtgaattacc tcgtgggatt ctgcccggag gggccctcgt gtaaattcat 601 gcaccctcga tttgaactgc ccatgggaac caccgagcag cccccactgc cacagcagac 661 acagcctcca gcaaagagaa ccccgcaggt catcggggtc atgcagagtc aaaacagcag 721 cgcgggcaac cggggacccc ggccactgga gcaggtcacc tgttacaagt gtggcgagaa 781 aggacactac gccaacagat gcaccaaagg gcacttggcc tttctcagtg gacagtgaca 841 gcagctggag ccagctccga gcagcccggg ggccccgctg ttgggagtgt gcatttaact 901 gtttcatgcg cttgttggcg cgactgtggc tcgagctggc ccgcagacac gtgggtttca 961 tcactctgag gggccacgtc tgttagtttc ctatcatttt gccgtagtat tttttgaaaa 1021 agggacatgt gtcctgtggg tccctgcagt cgacatcatg tttggctggg catcgatgcc 1081 tcctttctgg gactcccggc acaactccct gccctgctga atcctaaagc tgtgcctata 1141 tctgtgattt gaatgaggga gccctttggg gcaaattcag gtgcccccat tgcctcaggc 1201 tggccctggt cccaggtggc agcggttgag gaggggtaca gggctctcaa gcctgaggtt 1261 ttcttctctg ggcttaattt tctcttgggg tacgtgcctg acagtgttta aggtgtccgt 1321 tgaactggag ttgcagactt ttaaatagat gaccccttca gatcatctgt gcctacctcc 1381 tgcccatcag gcgtctacac tgtcactcag acacctgtgg catgtggagg agactgccct 1441 gtcctgagcc tggaaaatgt gaaactgtct cctgcaacct gctgggcatg tgggcctggc 1501 tgtgttcaat tgcaagaaca atttttatga aatggattaa agcttgtttt ttaaaaaaaa 1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1621 aaaaaaaaaa aaaaaaaaaa //