LOCUS BC050666 1164 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens INO80 complex subunit B, mRNA (cDNA clone
IMAGE:6527060), partial cds.
ACCESSION BC050666
VERSION BC050666.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1164)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1164)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC050666.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: p Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13775201.
FEATURES Location/Qualifiers
source 1..1164
/db_xref="H-InvDB:HIT000259166"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6527060"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1164
/gene="INO80B"
/gene_synonym="hIes2"
/gene_synonym="HMGIYL4"
/gene_synonym="IES2"
/gene_synonym="PAP-1BP"
/gene_synonym="PAPA-1"
/db_xref="GeneID:83444"
/db_xref="HGNC:HGNC:13324"
CDS <1..1067
/gene="INO80B"
/gene_synonym="hIes2"
/gene_synonym="HMGIYL4"
/gene_synonym="IES2"
/gene_synonym="PAP-1BP"
/gene_synonym="PAPA-1"
/codon_start=3
/product="INO80B protein"
/protein_id="AAH50666.2"
/db_xref="GeneID:83444"
/db_xref="HGNC:HGNC:13324"
/translation="KLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKK
HKKKHHQEEDAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVV
DNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELD
DNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERA
RKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSG
AQGSTLSFPPGVPAPTAVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYR
INLQMRLGGPEGPGSPLLAT"
BASE COUNT 248 a 365 c 364 g 187 t
ORIGIN
1 gtaagctgtg gcggcgtggg agcacctctg gggctatgga ggcccctgag ccgggagaag
61 ccctggagtt gagcctggcg ggtgcccatg gccatggagt gcacaagaaa aaacacaaga
121 agcacaagaa gaaacacaag aagaaacacc atcaggaaga agacgccggg cccacgcagc
181 cgtcccctgc caagcctcag ctcaaactca aaatcaagct tgggggacaa gtcctgggga
241 ccaagagtgt tcctaccttc actgtgatcc cagaggggcc tcgctcaccc tctcccctta
301 tggttgtgga taatgaagag gaacctatgg aaggagtccc ccttgagcag taccgtgcct
361 ggctggatga agacagtaat ctctctccct ctccacttcg ggacctatca ggagggttag
421 ggggtcagga ggaagaggag gaacagaggt ggctggatgc cctggagaag ggggagctgg
481 atgacaatgg agacctcaag aaggagatca atgagcggct gcttactgct cgacagcgag
541 ctctgctcca gaaggcgcgg agtcaacctt cccctatgct gccgctgcct gtagctgagg
601 gctgcccacc tcccgccctc acagaggaga tgctgctgaa gcgcgaggag cgggcgcgga
661 agcggcggct ccaggcggcg cggcgggcag aagagcacaa gaaccagact atcgagcgcc
721 tcaccaagac tgcggcgacc agtgggcggg gaggccgggg gggcgcacgg ggcgagcggc
781 ggggagggcg ggctgcggct ccggccccca tggtgcgcta ctgcagcgga gcacagggtt
841 ccaccctttc cttcccacct ggcgtccccg cccccacggc agtgtctcag cggccatccc
901 cctcaggccc gccgccgcgc tgctctgtcc ccggctgtcc ccatccgcgc cgctacgctt
961 gctcccgcac aggccaggca ctctgtagtc ttcagtgcta ccgcatcaac ctgcagatgc
1021 ggctgggggg gcccgagggt cctggatccc cccttttggc tacgtaaggc ccttaacccg
1081 gactctgcgc cccgtcccat gcccgctctt gagtatcttc cccaccctat taaattacat
1141 ccggtgctta aaaaaaaaaa aaaa
//