LOCUS BC050665 2040 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens leucine rich repeat containing 48, mRNA (cDNA clone
MGC:60187 IMAGE:5203312), complete cds.
ACCESSION BC050665
VERSION BC050665.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2040)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2040)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: c Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33636688.
FEATURES Location/Qualifiers
source 1..2040
/db_xref="H-InvDB:HIT000053546"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60187 IMAGE:5203312"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2040
/gene="LRRC48"
/gene_synonym="DKFZP586M1120"
/db_xref="GeneID:83450"
CDS 237..1808
/gene="LRRC48"
/gene_synonym="DKFZP586M1120"
/codon_start=1
/product="LRRC48 protein"
/protein_id="AAH50665.1"
/db_xref="GeneID:83450"
/translation="MNQPCNSMEPRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKD
VLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETI
EGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRT
LSLSRNPISEAEDYKMFICAYLPDLMYLDYWRIDDHTKKLAEAKHQYSIDELKHQENL
MQAQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGNNLSYLPGVGELLETY
KDKFVIICVNIFEYGLKQQEKRKTELDTFSECVREAIQENQEQGKRKIAKFEEKHLSS
LSAIREELELPNIEKMILECSADISELFDALMTLEMQLVEQLEETINMFERNIVDMVG
LFIENVQSLMAQCRDLENHHHEKLLEISISTLEKIVEGDLDEDLPNDLRALFVDKDTI
VNAVGASHDIHLLKIDNREDELVTRINSWCTRLIDRIHKDEIMRNRKRVKEINQYIDH
MQSELDNLECGDILD"
BASE COUNT 566 a 518 c 538 g 418 t
ORIGIN
1 gttcccagcg cttgagaagg gtcttcctat gttgcccggg ctggtcttga actcctgaac
61 tcaagcagtc cttccacctc ggcctcccaa agagctggga ttacaggtga aaattctgga
121 tctgttatct gtgaggaggc cactccgttg acagttgtgt aaaactctgc tgctttcccc
181 agctccaacc tctctggtct tcaacaacac tatcatcagg gaaaacgtgg gggaagatga
241 accagccgtg caactcgatg gagccgaggg tgatggacga tgacatgctc aagctggccg
301 tcggggacca gggcccccag gaggaggccg ggcagctggc caagcaggag ggcatcctct
361 tcaaggatgt cctgtccctg cagctggact ttcggaacat cctccgcata gacaacctct
421 ggcagtttga gaacttgagg aagctgcagc tggacaataa catcattgag aagatcgagg
481 gcctggagaa cctcgcacac ctggtctggc tggatctgtc tttcaacaac attgagacca
541 tcgaggggct ggacacactg gtgaacctgg aggacctgag cttgttcaac aaccggatct
601 ccaagatcga ctccctggac gccctcgtca agctgcaggt gttgtcgctg ggcaacaacc
661 ggattgacaa catgatgaac atcatctacc ttcggcggtt caagtgcctg cggacgctca
721 gcctctctag gaaccctatc tctgaggcag aggattacaa gatgttcatc tgtgcctacc
781 ttcctgacct catgtacctg gactactggc gcattgatga ccacacaaaa aagcttgcgg
841 aggctaagca ccagtacagc atcgacgagc tgaagcacca ggagaacctg atgcaggccc
901 agctggagga cgagcaggcg cagcgggagg agctagagaa gcacaagact gcgtttgtgg
961 aacacctgaa tggctccttc ctgtttgaca gcatgtacgc tgaggactca gagggcaaca
1021 atctgtccta cctgcctggt gtcggtgagc tccttgagac ctacaaggac aagtttgtca
1081 tcatctgcgt gaatattttt gagtatggcc tgaaacagca ggagaagcgg aaaacagagc
1141 ttgacacctt cagtgaatgt gtccgtgagg ccatccagga aaaccaggag cagggcaaac
1201 gcaagattgc caaattcgag gagaagcact tgtcgagttt aagtgccatt cgagaggagt
1261 tggaactgcc caacattgag aagatgatcc tagaatgcag tgctgacatc agtgagttgt
1321 tcgatgcgct catgacgctg gagatgcagc tggtggagca gctggaggag actataaaca
1381 tgtttgaaag gaacattgtt gacatggtag gactgtttat cgaaaatgtc caaagcctga
1441 tggctcagtg ccgggacctg gagaatcacc accacgagaa gctcctggag atctctatca
1501 gcaccctgga gaagattgtc gagggcgacc tggacgagga cctgcctaac gacctgcgcg
1561 cgctttttgt cgataaagat acgattgtta atgctgtcgg ggcatcgcac gacatccacc
1621 tcctgaagat tgacaatcga gaagatgagc tggtgaccag aatcaactct tggtgtacac
1681 gtttaataga caggattcac aaggatgaga tcatgaggaa ccgcaagcgc gtgaaggaga
1741 tcaatcagta catcgaccac atgcagagcg aactggacaa cctggaatgt ggcgacatcc
1801 tagactagat gaatgtcagc cacaggagct tcttcaaaac atagcaccag ccccagccag
1861 gagaaggaag tgcacacgcc tcacccgcac ctctagagag ttgctgggca tctctcaacc
1921 gcgatcccca acaccattct tcccccaccc ctggaaaaac ttccaaaagt agagaaaata
1981 aaggactcat ttcacatttc ccctactcat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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