LOCUS BC050638 1709 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens hematopoietically expressed homeobox, mRNA (cDNA clone
MGC:60128 IMAGE:6174612), complete cds.
ACCESSION BC050638
VERSION BC050638.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17978473.
FEATURES Location/Qualifiers
source 1..1709
/db_xref="H-InvDB:HIT000053532"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60128 IMAGE:6174612"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1709
/gene="HHEX"
/gene_synonym="HEX"
/gene_synonym="HMPH"
/gene_synonym="HOX11L-PEN"
/gene_synonym="PRH"
/db_xref="GeneID:3087"
/db_xref="HGNC:HGNC:4901"
/db_xref="MIM:604420"
CDS 4..816
/gene="HHEX"
/gene_synonym="HEX"
/gene_synonym="HMPH"
/gene_synonym="HOX11L-PEN"
/gene_synonym="PRH"
/codon_start=1
/product="hematopoietically expressed homeobox"
/protein_id="AAH50638.1"
/db_xref="GeneID:3087"
/db_xref="HGNC:HGNC:4901"
/db_xref="MIM:604420"
/translation="MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAA
PTPAPTLPSPNSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYP
FPRTVNDYTHALLRHDPLGKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQK
YLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQR
QDLPSEQNKGASLDSSQCSPSPASQEDLESEISEDSDQEVDIEGDKSYFNAG"
BASE COUNT 486 a 411 c 372 g 440 t
ORIGIN
1 gccatgcagt acccgcaccc cgggccggcg gcgggcgccg tgggggtgcc gctgtacgcg
61 cccacgccgc tgctgcaacc cgcacacccg acgccctttt acatcgagga catcctgggc
121 cgcgggcccg ccgcgcccac gcccgccccc acgctgccgt cccccaactc ctccttcacc
181 agcctcgtgt ccccctaccg gaccccggtg tacgagccca cgccgatcca tccagccttc
241 tcgcaccact ccgccgccgc gctggccgct gcctacggac ccggcggctt cgggggccct
301 ctgtacccct tcccgcggac ggtgaacgac tacacgcacg ccctgctccg ccacgacccc
361 ctgggcaaac ctctactctg gagccccttc ttgcagaggc ctctgcataa aaggaaaggc
421 ggccaggtga gattctccaa cgaccagacc atcgagctgg agaagaaatt cgagacgcag
481 aaatatctct ctccgcccga gaggaagcgt ctggccaaga tgctgcagct cagcgagaga
541 caggtcaaaa cctggtttca gaatcgacgc gctaaatgga ggagactaaa acaggagaac
601 cctcaaagca ataaaaaaga agaactggaa agtttggaca gttcctgtga tcagaggcaa
661 gatttgccca gtgaacagaa taaaggtgct tctttggata gctctcaatg ttcgccctcc
721 cctgcctccc aggaagacct tgaatcagag atttcagagg attctgatca ggaagtggac
781 attgagggcg ataaaagcta ttttaatgct ggatgatgac cactggcatt ggcatgttca
841 gaaaactgga tttaggaata atgttttgct acagaaaatc ttcatagaag aactggaagg
901 ctatataaga aagggaatca attctctggt attctggaaa cctaaaaata tttggtgcac
961 tgctcaatta acaaacctac atggagacct taattttgac ttaacaaata gtttatgtac
1021 tgctcttagg ttgttttgat aaagtgacat tatagtgatt aaattcttcc ccctttaaaa
1081 aaacagttag tggttttcac tatttataaa aaattaattt tgaacttttt gttaaatttt
1141 taagttatag ctttaaaggt tttaatagga ccttcttgaa cgacttttct gtaatctgtt
1201 tatctcccac ttaatggaaa ggcaaagggg taccccaaat ccagaggtgc ctacatttca
1261 ggcagccttg gagtatttta aaaggaaaac attctttact tttatatgac attcttatac
1321 tgctgtctca aatccaaaaa catttcagag ctcttgtctc agagatgtgt gttctttttg
1381 tcagagatat ggttgatgag aatcttaaat gcttgttttg cactatcact tagtacctgt
1441 ttgaccaagg tgttaagggg atagtacctc ccaattcaag cagagaaact gacctgacta
1501 aagttaatcg cagatgaact agaagtcaca ggttaattaa atgtaagtag attgtagata
1561 ctgttttata tcaaacaatg tttataatgt gtatatagaa ttgttcactg taaaaaaaat
1621 ggccaaaatg tgtttttttt taataagtaa cttgactata aaataaagcc gtccgtggga
1681 cgactgacct cgttaaaaaa aaaaaaaaa
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