LOCUS BC050564 4342 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone
MGC:57743 IMAGE:3912713), complete cds.
ACCESSION BC050564
VERSION BC050564.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4342)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4342)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: a Column: 16.
FEATURES Location/Qualifiers
source 1..4342
/db_xref="H-InvDB:HIT000259140"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57743 IMAGE:3912713"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4342
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
CDS 48..3365
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 1"
/protein_id="AAH50564.1"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
/translation="MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPDTKFWE
SPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFT
KLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLV
QNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEW
LRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIF
NEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLK
KDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHII
IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL
VPLHLRSPQVPAAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTLAKSKGASAGREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLA
YQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKK
VQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVE
NETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKELTDTCKERESDTGKKK
VEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHF
EELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQHGQNPQQAHQ
HSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPGSMMPGQHMP
GRMIPTVAANIHPSGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQPPPPPPA
DGVPPPPAPGPPASAAP"
BASE COUNT 1249 a 997 c 1091 g 1005 t
ORIGIN
1 cgcgagggcc ggggtgggcc aggctgtggg gacgacgggc tgcgacgatg gccgcagcgg
61 cgggcggcgg cgggccgggg acagcggtag gcgccacggg ctcggggatt gcggcggcag
121 ccgcaggcct agctgtttat cgacggaagg atgggggccc ggacaccaag ttttgggaga
181 gcccggagac ggtgtcccag ctggattcgg tgcgggtctg gctgggcaag cactacaaga
241 agtatgttca tgcggatgct cctaccaata aaacactggc tgggctggtg gtgcagcttc
301 ttcagttcca ggaagatgcc tttgggaagc atgtcaccaa cccggccttc accaaactcc
361 ctgcaaagtg tttcatggat ttcaaagctg gaggcgcctt atgtcacatt cttggggctg
421 cttacaagta taaaaatgaa cagggatggc ggaggtttga cctacagaac ccatctcgaa
481 tggatcgtaa tgtggaaatg tttatgaaca ttgaaaaaac attggtgcag aacaattgtt
541 tgaccagacc caacatctac ctcattccag acattgatct gaagttggct aacaaattga
601 aagatatcat caaacgacat cagggaacat ttacggatga gaagtcaaaa gcttcccacc
661 acatttaccc atattcttcc tcacaagacg atgaagaatg gttgagaccg gtgatgagaa
721 aagagaagca agtgttagtg cattggggct tttacccaga cagctatgat acttgggtcc
781 atagtaatga tgttgatgct gaaattgaag atccaccaat tccagaaaaa ccatggaagg
841 ttcatgtgaa atggattttg gacactgata ttttcaatga atggatgaat gaggaggatt
901 atgaggtgga tgaaaatagg aagcctgtga gttttcgtca gcggatttca accaagaatg
961 aagagccagt cagaagtcca gaaagaagag atagaaaagc atcagctaat gctcgaaaga
1021 ggaaacattc gccttcgcct ccccctccga caccaacaga atcacggaag aagagtggga
1081 agaaaggcca agctagcctt tatgggaagc gcagaagtca gaaagaggaa gatgagcaag
1141 aagatctaac caaggatatg gaagacccaa cacctgtacc caatatagaa gaagtagtac
1201 ttcccaaaaa tgtgaaccta aagaaagata gtgaaaatac acctgttaaa ggaggaactg
1261 tagcggatct agatgagcag gatgaagaaa cagtcacagc aggaggaaag gaagatgaag
1321 atcctgccaa aggtgatcag agtcgatcag ttgaccttgg ggaagataat gtgacagagc
1381 agaccaatca cattattatt cctagttatg catcatggtt tgattataac tgtattcatg
1441 tgattgaacg gcgtgctctt cctgagttct tcaatggaaa aaacaaatcc aagactccag
1501 aaatatactt ggcatatcga aattttatga ttgacacgta tcgtctaaac ccccaagagt
1561 atttaactag cactgcttgt cggaggaact tgactggaga tgtgtgtgct gtgatgaggg
1621 tccatgcctt tttagagcag tggggactcg ttaattacca agttgacccg gaaagtagac
1681 ccatggcaat gggacctcct cctactcctc attttaatgt attagctgat accccctctg
1741 ggcttgtgcc tctgcatctt cgatcacctc aggttcctgc tgctcaacag atgctaaatt
1801 ttcctgagaa aaacaaggaa aaaccagttg atttgcagaa ctttggtctc cgtactgaca
1861 tttactccaa gaaaacatta gcaaagagta aaggtgctag tgctggaaga gaatggactg
1921 aacaggagac ccttctactc ctggaggccc tggagatgta caaggatgat tggaacaaag
1981 tgtcggaaca tgttggaagt cgtactcagg atgaatgcat cctccacttt ttgagacttc
2041 ccattgagga cccatacctt gagaattcag atgcttccct tgggcctttg gcctaccagc
2101 ctgtcccctt cagtcagtca ggaaatccag ttatgagtac tgttgctttt ttggcatctg
2161 tggtggaccc tcgcgtggca tctgctgcag caaaagcggc tttggaggag ttttctcggg
2221 tccgggagga ggtaccactg gaattggttg aagctcatgt caagaaagta caagaagcag
2281 cacgagcctc tgggaaagtg gatcccacct acggtctgga gagcagctgc attgcaggca
2341 cagggcccga tgagccagag aagcttgaag gagctgaaga ggaaaaaatg gaagccgacc
2401 ctgatggtca gcagcctgaa aaggcagaaa ataaagtgga aaatgaaacg gatgaaggtg
2461 ataaagcaca agatggagaa aatgaaaaaa atagtgaaaa ggaacaggat agtgaagtga
2521 gtgaggatac caaatcagaa gaaaaggaga ctgaagagaa caaagaactc actgatacat
2581 gtaaagaaag agaaagtgat actgggaaga agaaagtaga acatgaaatt tccgaaggaa
2641 atgttgccac agccgcagca gctgctcttg cctcagcggc taccaaagcc aagcacctgg
2701 ctgcagtgga agaaagaaag atcaagtccc tggtagctct cttggttgag acacaaatga
2761 agaaactaga gatcaaactt cgacattttg aagagctgga aactatcatg gacagagaga
2821 aagaagctct agaacaacag aggcagcagt tgcttactga acgccaaaac ttccacatgg
2881 aacagctgaa gtatgctgaa ttacgagcac gacagcaaat ggaacagcag cagcatggcc
2941 agaaccctca acaggcacac cagcactcag gaggacctgg cctggcccca cttggagcag
3001 cagggcaccc tggcatgatg cctcatcaac agccccctcc ctaccctctg atgcaccacc
3061 agatgccacc acctcatcca ccccagccag gtcagatacc aggcccaggt tccatgatgc
3121 ccgggcagca catgccaggc cgcatgattc ccactgttgc agccaacatc cacccctctg
3181 ggagtggccc tacccctcct ggcatgccac caatgccagg aaacatctta ggaccccggg
3241 tacccctgac agcacctaac ggcatgtatc cccctccacc acagcagcag ccaccgccac
3301 caccacctgc agatggggtc cctccgcctc ctgctcctgg cccgccagcc tcagctgctc
3361 cttagcctgg aagatgcagg gaacctccac gcccaccacc atgagctgga gtggggatga
3421 caagacttgt gttcctcaac tttcttgggt ttctttcagg atttttcttc tcacagctcc
3481 aagcacgtgt cccgtgcctc cccactcctc ttaccacccc tctctctgac actttttgtg
3541 ttgggtcctc agccaacact caaggggaaa cctgtagtga cagtgtgccc tggtcatcct
3601 taaaataacc tgcatctccc ctgtcctggt gtgggagtaa gctgacagtt tctctgcagg
3661 tcctgtcaac tttagcatgc tatgtcttta ccatttttgc tctcttgcag ttttttgctt
3721 tgtcttatgc ttctatggat aatgctatat aatcattatc tttttatctt tctgttatta
3781 ttgttttaaa ggagagcatc ctaagttaat aggaaccaaa aaataatgat gggcagaagg
3841 ggggaatagc cacaggggac aaaccttaag gcattataag tgaccttatt tctgcttttc
3901 tgagctaaga atggtgctga tggtaaagtt tgagactttt gccacacaca aatttgtgaa
3961 aattaaacga gatgtggaag gagaacctca gtgattttat tccctagtga ggcctctgag
4021 ggcctccaca ctgcctggca gaacatacca ctgaactagt atgtgctaga ggagggcaca
4081 aacatccgct ccttccctag gcctgctggc tctggttttc tatgcagatg attcattgga
4141 ttgggggtga gtgttttgtt tttctggggg cagtgtgagc tttgagggtt ggaatattgg
4201 gaggcattcc ttagtttcct caactagcct ggaaagttag gagtctaggg taattacccc
4261 ccaatgagtc tagcctacta ttcactgctt tgtgtgcatt tttttctccc tctttaaaaa
4321 accctttaaa aaaaaaaaaa aa
//