LOCUS BC050553 4471 bp mRNA linear HUM 27-OCT-2006 DEFINITION Homo sapiens patatin-like phospholipase domain containing 6, mRNA (cDNA clone MGC:57655 IMAGE:5741213), complete cds. ACCESSION BC050553 VERSION BC050553.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4471) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4471) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 107 Row: h Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31543298. FEATURES Location/Qualifiers source 1..4471 /db_xref="H-InvDB:HIT000053493" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:57655 IMAGE:5741213" /tissue_type="Duodenum, adenocarcinoma" /clone_lib="NIH_MGC_88" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4471 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" CDS 247..4230 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /codon_start=1 /product="patatin-like phospholipase domain containing 6" /protein_id="AAH50553.1" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" /translation="MEAPLQTGMVLGVMIGAGVAVVVTAVLILLVVRRLRVPKTPAPD GPRYRFRKRDKVLFYGRKIMRKVSQSTSSLVDTSVSATSRPRMRKKLKMLNIAKKILR IQKETPTLQRKEPPPAVLEADLTEGDLANSHLPSEVLYMLKNVRVLGHFEKPLFLELC RHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVVPGDSVNSL LSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQ RVTFLALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRMVSTSATDEPRET PGRPPDPTGAPLPGPTGDPVKPTSLETPSPPLLSRCVSMPGDISGLQGGPRSDFDMAY ERGRISVSLQEEASGGSLAAPARTPTQEPREQPAGACEYSYCEDESATGGCPFGPYQG RQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGDQDVSLHFVLWGC LHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYE IMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNG RLRSVIQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHAVRDTELAKLPEGTLGH IKRRYPQVVTRLIHLLSQKILGNLQQLQGPFPAGSGLGVPPHSELTNPASNLATVAIL PVCAEVPMVAFTLELQHALQAIGPTLLLNSDIIRARLGASALDSIQEFRLSGWLAQQE DAHRIVLYQTDASLTPWTVRCLRQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQL VLLHREEGAGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRSPAKLHELYEKVFSRRAD RHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIG ALYAEERSASRTRQRAREWAKSMTSVLEPVLDLTYPVTSMFTGSAFNRSIHRVFQDKQ IEDLWLPYFNVTTDITASAMRVHKDGSLWRYVRASMTLSGYLPPLCDPKDGHLLMDGG YINNLPADIARSMGAKTVIAIDVGSQDETDLSTYGDSLSGWWLLWKRLNPWADKVKVP DMAEIQSRLAYVSCVRQLEVVKSSSYCEYLRPPIDCFKTMDFGKFDQIYDVGYQYGKA VFGGWSRGNVIEKMLTDRRSTDLNESRRADVLAFPSSGFTDLAEIVSRIEPPTSYVSD GCADGEESDCLTEYEEDAGPDCSRDEGGSPEGASPSTASEMEEEKSILRQRRCLPQEP PGSATDA" BASE COUNT 867 a 1443 c 1380 g 781 t ORIGIN 1 gcggaacgct agcggtgttg gcgcggagtg gaccccggct gcggcccctg gcaatggcgc 61 caccatcggt cccggagtcc cagtgatgct ctgtgccata gagcccccat aacttcacta 121 ctacgtgata gtaaatcccc ggcaaaaacc agcagcgcct tgcaagccca cgccacccca 181 agcatcccag gactcttctg aaacgactcc gggctaccag atcggccgtc cagctggaat 241 caaccgatgg aggctccgct gcaaactgga atggtgcttg gcgtgatgat cggggccgga 301 gtggcggtgg tggtcacggc cgtgctcatc ctcctggtgg tgcggaggct gcgagtgcca 361 aaaaccccag ccccggatgg cccccggtat cggttccgga agagggacaa agtgctcttc 421 tatggccgga agattatgcg gaaggtgtca caatccacct cctccctcgt ggatacctct 481 gtctccgcca cctcccggcc acgcatgagg aagaaactga agatgctcaa cattgccaag 541 aagatcctgc gcatccagaa agagacgccc acgctgcagc ggaaggagcc cccgcccgca 601 gtgctagaag ctgacctgac cgagggcgac ctggctaact cccatctgcc ctctgaagtg 661 ctttatatgc tcaagaacgt ccgggtgctg ggccacttcg agaagccact cttcctggag 721 ctctgccgcc acatggtctt ccagcggctg ggccagggtg actacgtctt ccggccgggc 781 cagccagatg ccagcatcta cgtggtgcag gacgggctgc tggagctctg tctgccaggg 841 cctgacggga aggagtgtgt ggtgaaggaa gtggttcctg gggacagcgt caacagcctt 901 ctcagcatcc tggatgtcat caccggtcac cagcatcccc agcggaccgt gtctgcccgg 961 gcggcccggg actccacggt gctgcgcctg ccggtggaag cattctccgc ggtcttcacc 1021 aagtacccgg agagcttggt gcgggtcgtg cagatcatca tggtgcggct gcagcgagtc 1081 accttcctgg cactgcacaa ctacctgggt ctgaccaatg agctcttcag ccacgagatc 1141 cagcccctgc gtctgttccc cagccccggc ctcccaactc gcaccagccc tgtgcggggc 1201 tccaagagaa tggtcagcac ctcagctaca gacgagccca gggagacccc agggcggcca 1261 cccgatccca ccggggcccc gctgcctgga cctacagggg accctgtgaa gcccacatcc 1321 ctggaaaccc cctcgccccc tctgctgagc cgctgcgtct ccatgccagg ggacatctca 1381 ggcttgcagg gtggcccccg ctccgacttc gacatggcct atgagcgtgg ccggatctcc 1441 gtgtccctgc aagaagaggc ctccgggggg tccctggcag cccccgctcg gacccccact 1501 caggagcctc gtgagcagcc ggcaggcgcc tgtgaataca gctactgtga ggatgagtcg 1561 gccactggtg gctgcccttt cgggccctac cagggccgcc agaccagcag catcttcgag 1621 gcagcaaagc aggagctggc caagctgatg cggattgagg acccctccct cctgaacagc 1681 agagtcttgc tgcaccacgc caaagctggc accatcattg cccgccaggg agaccaggac 1741 gtgagcctgc acttcgtgct ctggggctgc ctgcacgtgt accagcgcat gatcgacaag 1801 gcggaggacg tgtgcctgtt cgtagcgcag cccggggaac tggtggggca gctggcggtg 1861 ctcactggcg aacctctcat cttcacactg cgagcccaac gcgactgcac cttcctgcgg 1921 atctccaagt ccgacttcta tgagatcatg cgcgcacagc ccagtgtggt gctgagtgcg 1981 gcgcacacgg tggcagccag gatgtcgccc ttcgtgcgcc agatggactt cgccatcgac 2041 tggactgcag tggaggcggg acgcgcgctg tacaggcagg gcgaccgctc cgactgcact 2101 tacatcgtgc tcaatgggcg gctgcgtagc gtgatccagc gaggcagtgg caagaaggag 2161 ctggtgggcg agtacggccg cggcgacctc atcggcgtgg tggaggcact gacccggcag 2221 ccgcgagcca cgacggtgca cgcggtgcgc gacacggagc tggccaagct tcccgagggc 2281 accttgggtc acatcaaacg ccggtacccg caggtcgtga cccgccttat ccacctactg 2341 agccagaaaa ttctagggaa tttgcagcag ctgcaaggac ccttcccagc aggctctggg 2401 ttgggtgtgc ccccacactc ggaactcacc aacccagcca gcaacctggc aactgtggca 2461 atcctgcctg tgtgtgctga ggtccccatg gtggccttca cgctggagct gcagcacgcc 2521 ctgcaggcca tcggtccgac gctactcctt aacagtgaca tcatccgggc acgcctgggg 2581 gcctccgcac tggatagcat ccaagagttc cggctgtcag ggtggctggc ccagcaggag 2641 gatgcacacc gtatcgtact ctaccagacg gacgcctcgc tgacgccctg gaccgtgcgc 2701 tgcctgcgac aggccgactg catcctcatt gtgggcctgg gggaccagga gcctaccctc 2761 ggccagctgg agcagatgct ggagaacacg gctgtgcgcg cccttaagca gctagtcctg 2821 ctccaccgag aggagggcgc gggccccacg cgcaccgtgg agtggctaaa tatgcgcagc 2881 tggtgctcgg ggcacctgca cctgcgctgt ccgcgccgcc tcttttcgcg ccgcagccct 2941 gccaagctgc atgagctcta cgagaaggtt ttctccaggc gcgcggaccg gcacagcgac 3001 ttctcccgct tggcgagggt gctcacgggg aacaccattg cccttgtgct aggcgggggc 3061 ggggccaggg gctgctcgca catcggagta ctaaaggcat tagaggaggc gggggtcccc 3121 gtggacctgg tgggcggcac gtccattggc tctttcatcg gagcgttgta cgcggaggag 3181 cgcagcgcca gccgcacgag gcagcgggcc cgggagtggg ccaagagcat gacttcggtg 3241 ctggaacctg tgttggacct cacgtaccca gtcacctcca tgttcactgg gtctgccttt 3301 aaccgcagca tccatcgggt cttccaggat aagcagattg aggacctgtg gctgccttac 3361 ttcaacgtga ccacagatat caccgcctca gccatgcgag tccacaaaga tggctccctg 3421 tggcggtacg tgcgcgccag catgacgctg tcgggctacc tgcccccgct gtgcgacccc 3481 aaggacgggc acctactcat ggatggcggc tacatcaaca atctgccagc ggacatcgcc 3541 cgcagcatgg gtgccaaaac ggtcatcgcc attgacgtgg ggagccagga tgagacggac 3601 ctcagcacct acggggacag cctgtccggc tggtggctgc tgtggaagcg gctgaatccc 3661 tgggctgaca aggtaaaggt tccagacatg gctgaaatcc agtcccgcct ggcctacgtg 3721 tcctgtgtgc ggcagctaga ggttgtcaag tccagctcct actgcgagta cctgcgcccg 3781 cccatcgact gcttcaagac catggacttt gggaagttcg accagatcta tgatgtgggc 3841 taccagtacg ggaaggcggt gtttggaggc tggagccgtg gcaacgtcat tgagaaaatg 3901 ctcacagacc ggcggtctac agaccttaat gagagccgcc gtgcagacgt gcttgccttc 3961 ccaagctctg gcttcactga cttggcagag attgtgtccc ggattgagcc ccccacgagc 4021 tatgtctctg atggctgtgc tgacggagag gagtcagatt gtctgacaga gtatgaggag 4081 gacgccggac ccgactgctc gagggatgaa ggggggtccc ccgagggcgc aagccccagc 4141 actgcctccg agatggagga ggagaagtcg attctccggc aacgacgctg tctgccccag 4201 gagccgcccg gctcagccac agatgcctga ggacctcgac aggggtcacc ccctccctcc 4261 cacccctgga ctgggctggg ggtggccccg tgggggtagc tcactccccc tcctgctgct 4321 atgcctgtga cccccgcggc ccacacactg gactgacctg ccctgagcgg ggatgcagtg 4381 ttgcactgat gacttgacca gcccctcccc caataaactc gcctcttgga aaaaaaaaaa 4441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //