LOCUS BC050419 2052 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens leucine rich repeat containing 48, mRNA (cDNA clone
MGC:54111 IMAGE:5766999), complete cds.
ACCESSION BC050419
VERSION BC050419.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2052)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2052)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33636688.
FEATURES Location/Qualifiers
source 1..2052
/db_xref="H-InvDB:HIT000053444"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54111 IMAGE:5766999"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2052
/gene="LRRC48"
/gene_synonym="DKFZP586M1120"
/db_xref="GeneID:83450"
CDS 241..1812
/gene="LRRC48"
/gene_synonym="DKFZP586M1120"
/codon_start=1
/product="LRRC48 protein"
/protein_id="AAH50419.1"
/db_xref="GeneID:83450"
/translation="MNQPCNSMEPRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKD
VLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETI
EGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRT
LSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELKHQENL
MQAQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGNNLSYLPGVGELLETY
KDKFVIICVNIFEYGLKQQEKRKTELDTFSECVREAIQENQEQGKRKIAKFEEKHLSS
LSAIREELELPNIEKMILECSADISELFDALMTLEMQLVEQLEETINMFERNIVDMVG
LFIENVQSLMAQCRDLENHHHEKLLEISISTLEKIVEGDLDEDLPNDLRALFVDKDTI
VNAVGASHDIHLLKIDNREDELVTRINSWCTRLIDRIHKDEIMRNRKRVKEINQYIDH
MQSELDNLECGDILD"
BASE COUNT 587 a 515 c 539 g 411 t
ORIGIN
1 ccgagttccc agcgcttgag aagggtcttc ctatgttgcc cgggctggtc ttgaactcct
61 gaactcaagc agtccttcca ccttggcctc ccaaagagct gggattacag gtgaaaattc
121 tggatctgtt atctgtgagg aggccactcc gttgacagtt gtgtaaaact ctgctgcttt
181 ccccagctcc aacctctctg gtcttcaaca acactatcat cagggaaaac gtgggggaag
241 atgaaccagc cgtgcaactc gatggagccg agggtgatgg acgatgacat gctcaagctg
301 gccgtcgggg accagggccc ccaggaggag gccgggcagc tggccaagca ggagggcatc
361 ctcttcaagg atgtcctgtc cctgcagctg gactttcgga acatcctccg catagacaac
421 ctctggcagt ttgagaactt gaggaagctg cagctggaca ataacatcat tgagaagatc
481 gagggcctgg agaacctcgc acacctggtc tggctggatc tgtctttcaa caacattgag
541 accatcgagg ggctggacac actggtgaac ctggaggacc tgagcttgtt caacaaccgg
601 atctccaaga tcgactccct ggacgccctc gtcaagctgc aggtgttgtc gctgggcaac
661 aaccggattg acaacatgat gaacatcatc tacctccggc ggttcaagtg cctgcggacg
721 ctcagcctct ctaggaaccc tatctctgag gcagaggatt acaagatgtt catctgtgcc
781 taccttcctg acctcatgta cctggactac cggcgcattg atgaccacac aaaaaagctt
841 gcggaggcta agcaccagta cagcatcgac gagctgaagc accaggagaa cctgatgcag
901 gcccagctgg aggacgagca ggcgcagcgg gaggagctag agaagcacaa gactgcgttt
961 gtggaacacc tgaatggctc cttcctgttt gacagcatgt acgctgagga ctcagagggc
1021 aacaatctgt cctacctgcc tggtgtcggt gagctccttg agacctacaa ggacaagttt
1081 gtcatcatct gcgtgaatat ttttgagtat ggcctgaaac agcaggagaa gcggaaaaca
1141 gagcttgaca ccttcagtga atgtgtccgt gaggccatcc aggaaaacca ggagcagggc
1201 aaacgcaaga ttgccaaatt cgaggagaag cacttgtcga gtttaagtgc cattcgagag
1261 gagttggaac tgcccaacat tgagaagatg atcctagaat gcagtgctga catcagtgag
1321 ttgttcgatg cgctcatgac gctggagatg cagctggtgg agcagctgga ggagactata
1381 aacatgtttg aaaggaacat tgttgacatg gtaggactgt ttatcgaaaa tgtccaaagc
1441 ctgatggctc agtgccggga cctggagaat caccaccacg agaagctcct ggagatctct
1501 atcagcaccc tggagaagat tgtcgagggc gacctggacg aggacctgcc taacgacctg
1561 cgcgcgcttt ttgtcgataa agatacgatt gttaatgctg tcggggcatc gcacgacatc
1621 cacctcctga agattgacaa tcgagaagat gagctggtga ccagaatcaa ctcttggtgt
1681 acacgtttaa tagacaggat tcacaaggat gagatcatga ggaaccgcaa gcgcgtgaag
1741 gagatcaatc agtacatcga ccacatgcag agcgaactgg acaacctgga atgtggcgac
1801 atcctagact agatgaatgt cagccacagg agcttcttca aaacatagca ccagccccag
1861 ccaggagaag gaagtgcaca cgcctcaccc gcacctctag agagttgctg ggcatctctc
1921 aaccgcgatc cccaacacca ttcttccccc acccctggaa aaacttccaa aagtagagaa
1981 aataaaggac tcatttcaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aa
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