LOCUS BC050401 1677 bp mRNA linear HUM 26-NOV-2007
DEFINITION Homo sapiens family with sequence similarity 71, member D, mRNA
(cDNA clone MGC:52107 IMAGE:5745029), complete cds.
ACCESSION BC050401
VERSION BC050401.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1677)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1677)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: d Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734950.
FEATURES Location/Qualifiers
source 1..1677
/db_xref="H-InvDB:HIT000053438"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52107 IMAGE:5745029"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1677
/gene="FAM71D"
/db_xref="GeneID:161142"
/db_xref="HGNC:HGNC:20101"
CDS 223..1425
/gene="FAM71D"
/codon_start=1
/product="FAM71D protein"
/protein_id="AAH50401.1"
/db_xref="GeneID:161142"
/db_xref="HGNC:HGNC:20101"
/translation="MKKNTSKTTMRINKQDALCTPHSHDPRDLQNMLDGGEYAPFVSP
PMLESNFIQVNRRGESIYLHNRANWVTVGICFSSSTHKIPNVMLLAHLTPGAQKDTET
LFKSLLTSPPAEKLVLTRFLPLQFVTLSVHDAENMSLKVKLVSGRAYYLQLCTSAYKQ
DTLFSQWVALISLLNQEKAKVSKVSEVSSLSGITNSTDITGSMDVTDVTTFTAILTPY
MYAGTGPEHVRDSIDFPEFTDITDITDVTDLPENEVPEVPDVRIVTEVIEVREATEVT
DSSDITNCSGVTVVFENNDLIRAKQEEKEKLKNILKPGCLQDTKSKRYFQTTLTPVES
EANTSKEMKDKTSEEKMPDFQSTALKAEESRSLRTESNTSVLSPHIKSPSNFLKLVPH
LSAPFSRE"
BASE COUNT 567 a 376 c 344 g 390 t
ORIGIN
1 aaacacctgc taaagaaatg tgaaaagagt ggaaacgtgc tatttggagg ttattttcct
61 agtcgacatc caggagatct ccagagatct atttcagccc cacctgttga tttcatcatg
121 aaaaggagga agctcaaact gaagtgagtt aaaaacttca tctcctagag aggactgtgg
181 ctcggcctga gttgagtttt tttatgttta tgtgcaagcg caatgaagaa gaacaccagc
241 aagactacca tgaggatcaa taagcaagat gctctctgca ccccacactc ccatgatccg
301 agagatcttc aaaatatgtt ggatggagga gagtatgccc cttttgtatc tcctcccatg
361 ttagagagca attttatcca ggtcaacaga agaggtgaat ccatttacct tcataaccga
421 gccaactggg tgaccgtagg catctgtttt tccagctcca cccacaagat ccccaatgtg
481 atgctactgg cccatctgac acctggtgcc caaaaagata cagaaaccct gtttaaaagt
541 ctcctgacat ctcctcctgc agagaaacta gtgctcacca ggtttctccc tctgcagttt
601 gtgactcttt ctgtgcatga tgcggagaac atgagcctga aagtaaagct ggtgagtggt
661 cgagcctact acttacagct ctgcacctct gcatataaac aggacacctt gttttctcaa
721 tgggtggccc tcatctccct cttgaatcag gagaaagcca aagtttccaa agtgtcggag
781 gtttcaagtc tctcaggaat tacgaatagc acagacatca caggctccat ggatgtgacg
841 gatgtcacca cgttcacagc catcctgacc ccgtacatgt atgcaggtac aggccctgaa
901 catgtcaggg acagcataga tttcccagaa ttcacagaca tcaccgacat cacagatgtc
961 acagatcttc cagaaaatga ggtcccagag gtcccggatg taagaattgt cacagaagtc
1021 atagaagtca gagaagccac ggaagtcaca gacagctctg atattacaaa ctgctcggga
1081 gtcacagtgg tgtttgaaaa caatgactta atcagggcca agcaagagga gaaggaaaaa
1141 ttgaaaaaca ttctgaagcc tgggtgttta caagatacaa aaagtaaaag atattttcaa
1201 actaccttga ccccagtaga aagtgaggca aatacatcca aggagatgaa ggataagacc
1261 tctgaagaaa agatgcctga ttttcagagc acagctctca aggctgaaga atccaggagc
1321 ttgagaactg aatcaaacac ttcagttctc tcccctcata tcaaatctcc ttctaatttc
1381 ctcaaacttg tgcctcatct gtctgcccct ttctcaaggg aatgaatgtg aggaaagaaa
1441 agtaaaacag aaaaagacaa agttgatgga aaaacatgta agacaaacta aagacatttg
1501 aattaaatga actgacttct ccaccttttt ttaaaatcag atacaaacta ctaaactaaa
1561 aagcaaacac agctcaggga aagacaatca gtgcaagagg aaaaccaagc agtgtcttct
1621 acgtggcaga aataaagcct atgactaatc aaaaaaaaaa aaaaaaaaaa aaaaaaa
//