LOCUS BC050398 2444 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
cerevisiae), mRNA (cDNA clone IMAGE:6046382), partial cds.
ACCESSION BC050398
VERSION BC050398.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2444)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2444)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC050398.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: j Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29789007.
FEATURES Location/Qualifiers
source 1..2444
/db_xref="H-InvDB:HIT000259120"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6046382"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2444
/gene="PRPF40B"
/gene_synonym="HYPC"
/db_xref="GeneID:25766"
/db_xref="HGNC:HGNC:25031"
CDS 80..>2444
/gene="PRPF40B"
/gene_synonym="HYPC"
/codon_start=1
/product="PRPF40B protein"
/protein_id="AAH50398.1"
/db_xref="GeneID:25766"
/db_xref="HGNC:HGNC:25031"
/translation="MMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLP
PMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHV
APDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESR
WTRPKDLDDLEVLVKQEAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLLEP
EPGGSEDCDVLEATQPLEQGFLQQLEEGPSSSGQHQPQQEEEESKPEPERSGLSWSNR
EKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKE
EKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYD
DVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDH
QLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETG
QLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDIL
KDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEAR
RMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQV
LETECQHLHTKGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSES
GSEPSSSLDSVESGGAALGGRGSPSSHLLGADHGLRKAKKPKKKKKKK"
BASE COUNT 601 a 725 c 713 g 405 t
ORIGIN
1 cggaggctct ggcatgtcgg ttcccgattc tggtccccgg cccccagcag cgcctgcccc
61 cttcccaccg gggcccccca tgatgccacc acccttcatg ccccctccag ggatcccccc
121 accctttcct ccgatggggc taccccccat gagtcagaga ccaccagcta tcccccccat
181 gccacctggc atcctgcccc caatgcttcc accaatgggg gcgccaccac cactcacaca
241 gataccagga atggtacctc cgatgatgcc aggaatgctg atgccagcgg tgcctgtcac
301 cgcagcgacg gctccgggtg cggacaccgc cagctctgct gtggctggga caggccctcc
361 gagggcccta tggagtgagc atgtggcccc agatgggcgc atctactact acaatgctga
421 cgacaagcag tccgtgtggg agaagcccag cgtgctcaag tccaaggcag agctgctcct
481 gtcccaatgt ccctggaaag agtacaagtc ggacacaggc aaaccttatt actataacaa
541 ccagagtaaa gagtcccgct ggacccggcc caaggatctg gatgacctag aggttctagt
601 caaacaagag gctgcaggga aacagcagca gcagctgcca cagacacttc agccacagcc
661 acctcagcca cagcctgacc ccccacctgt gcctcctggc cccaccccag tgcccacagg
721 cctcctggaa cctgagccag gtgggagtga agattgtgat gtgttggagg ccacccagcc
781 cctggaacag gggttcctgc agcagctgga ggagggcccc agcagttctg gacagcatca
841 gccacagcag gaggaggagg aatcaaagcc agaaccagag aggtctggcc tcagttggag
901 caaccgggag aaggcaaagc aggcattcaa ggaactgctg agggacaagg ctgtcccctc
961 caatgcctca tgggaacagg ccatgaagat ggtggtcacc gacccccgtt acagtgcctt
1021 gcctaaactg agtgagaaaa agcaggcatt caatgcctac aaggcgcagc gggagaagga
1081 ggagaaggag gaggcccggc taagggccaa agaggccaag cagaccctgc agcatttcct
1141 ggagcagcat gaacgcatga cctccaccac ccgctaccgg cgggcagaac agacctttgg
1201 ggagctggag gtctgggctg tggtccctga gagggatcga aaagaggttt atgatgatgt
1261 cctcttcttc ctggccaaga aggagaagga acaggccaag cagctccggc gccgcaatat
1321 ccaggcccta aagagcatcc tggatgggat gagtagtgtc aacttccaaa ccacgtggtc
1381 ccaggcccag cagtacctca tggataaccc cagctttgct caggaccatc agctgcagaa
1441 catggacaag gaagatgcac tgatctgttt tgaggagcac atccgagctt tggagaggga
1501 agaggaggag gaacgggagc gggcccggct tcgggagcga cgccaacaac gcaagaatcg
1561 ggaggccttc cagaccttcc tggacgagct gcatgagaca gggcagctgc actctatgtc
1621 cacctggatg gagctatatc cagcagtcag cactgatgtc cgctttgcca acatgctggg
1681 ccagccgggc tccacccctc tggacttatt caagttctat gtggaggagt tgaaggcacg
1741 attccatgat gaaaagaaga tcattaagga catccttaag gaccggggct tctgcgtgga
1801 ggtgaacacg gcctttgagg acttcgccca cgtcataagc tttgacaaga gggctgccgc
1861 actggacgca ggcaacatca agctgacctt caatagtctg ctggagaaag cagaggcacg
1921 ggagagggag cgggagaagg aggaggcacg caggatgcgg cgcagggaag ctgcctttcg
1981 aagcatgctg aggcaggctg tgcctgctct ggagctaggc actgcctggg aagaggtccg
2041 tgagcgtttt gtgtgtgact cagcctttga gcagatcacc ctggagtcgg agcggatccg
2101 gctcttccgg gagttcctac aggtgctgga gactgaatgc cagcacctcc acaccaaagg
2161 ccgaaagcat ggcaggaaag gcaagaagca ccatcacaag cgttcccact caccctcagg
2221 ctctgagtca gaagaagagg agctgccccc accatctctc cggcccccca agcggaggag
2281 gcggaacccc tcagagtcag gctctgagcc ctcttcctca cttgattcag ttgaaagtgg
2341 gggtgctgcc cttggaggac ggggctcccc ttcctcccat cttcttggag cagatcatgg
2401 ccttcggaaa gccaagaaac caaaaaaaaa aaaaaaaaaa aaaa
//