LOCUS BC050289 4158 bp mRNA linear HTC 09-SEP-2005 DEFINITION Homo sapiens sorting nexin 13, mRNA (cDNA clone IMAGE:5271192), with apparent retained intron. ACCESSION BC050289 VERSION BC050289.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4158) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4158) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: m Column: 20 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..4158 /db_xref="H-InvDB:HIT000099133" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5271192" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" BASE COUNT 1388 a 702 c 774 g 1294 t ORIGIN 1 tcagtggagg tagcaacagg gttgcttgtg tcacccctct cccagctcca cacaactcag 61 cagagagact gactctgttt gggagaatgt aagggaagaa agcaagagtt tctgcctggt 121 aatttagata attcttccac atcttattta ggaccataaa ggcaatacca ctacaagtct 181 ttcagagcca caacattagt aggcttaggg tgcctctaat gtatatatgg ctacagttac 241 tagaaacata gatcacaaca cccaagttcc tttgaatacc tggaaagcct tcccaagaag 301 gactgggaca aacaagccca gactgtaaag actgcaataa atgcctaact cttcaatgtc 361 cagacatcag tgaacatcca caagcatcaa gaccattcag gaaaacattg gcctcaccaa 421 atggactaaa taagacacca cagaccaatc ctggagacag agatatgtgt ccttttgggt 481 ggaaaaatca gaatagttgt tttgaggaag tacaacaaaa ttcaagataa tacagagaag 541 gaattcagaa tcttatcaga taaatttaac aaagagatta aaataataaa tagaatcaag 601 cacaaatctt ggagttgaaa aatgcagttg acctactgac gaatgcatca gaatttctta 661 acagaattga tcaagcagaa gaaggaatga gtgaacttga agacaggcta attgaaaata 721 cacagaggag aaaaaagaat aaaaaggaat gaggcacaac tacaagatct agaaaatagc 781 ctcaaaaggg caaatttaag agttattgtc cttaaagagg aggtagagag agagttaggc 841 gtagaaaatt tattcagata gataataaca gagagcctct caaacctagt aaaagatatc 901 aatattaaaa tacaagaagg ttatagaaca ctgagcagat ttaacccaag actacctcaa 961 gatacttaat aatcaaactc tcaaaggtca aggatgaaga aaggatccta aaagcagcaa 1021 gagaaaaaga aaaaaacatg gaatggtgct ccagtacatt tgccagcaga cttctcagtg 1081 gaagttgtac aggccaggag agagtggcat gccatatttt agtgtggatt aggaacttca 1141 gcaaagtatt atcagaggaa ctgagtgtct ctgtacttta ttctaaataa ctatgtccta 1201 cttacccgct cttagaagga agtcagagga cacttctgta ggtgaaatag tattcccccc 1261 tgattcagag agaagagagc atggaggcag agcagaaact tcgttagcag gcattctgtc 1321 ctttggttaa aagataaaag tggccaagat gtggaaaaag gataataaaa cacaaaggaa 1381 taagagttgt ataactctga gggacgtaaa agaagttata ttgggagcta gtttcaagat 1441 gaaatactaa ttctaagcca gtctatccat atggggatgg ggaagccttg gcattgtcct 1501 ttttctgata acctttggac cctttgtaat attttatttg acattttata tcctctgctt 1561 tgtgggtggg ggtttagtgg ttactctcct gtttggaaaa acaaactcag agaagtacct 1621 agaacagtgt gaacactcat ttcttcctcc aacatcacct ggggttccta agtgcttaga 1681 agaaatgaaa cgggaagcca ggactattaa gattgataga agattgacgg gtgccaatat 1741 aattgatgaa cctctccagc aagttatcca gttttccttg agggattatg tccagtattg 1801 gtattataca ctaagcgatg atgaatcttt tcttcttgaa attaggcaga ctcttcaaaa 1861 cgcactcatt cagtttgcta ctaggtaagg acacgacatt gtatttatgc agaaaaattt 1921 agatgtatgg tttgtaccag taaggaaaac aacttttaag gggaggaatt gtttattaaa 1981 aggtaagtag aacagcagat tattactgtg ggataactcc aagattttac aactagagct 2041 cttaaaacct ttaaattacc ccagatttta ggtttttaca gaatgttatt ttgattaagc 2101 cctgctttct aagtctgttt ggtagttttt tctttagggt ccaaatcagg tgacttttca 2161 aatctgttac cccacttatt gctacttccc ccctccccct tccctagacc ctctatttta 2221 tgtgagtgct atgaaaatag attagtttca gtgtaactgc tcttctccac atagttttgc 2281 tgtaaccctt ctcctaatta tgacacatat ctattggaag tcctcttgga cgagaaggga 2341 ccaaaggaac ataagtcagt ggaaaatatt caagtttata tttttcagaa aagaagtata 2401 ttttggtgag tttgttttaa caaacttttt ttgtcagata tactaaaatt cttactttac 2461 aaaccagcta tatactgctt cccatatgat gaaagtgttt tgacttctat tcttgtactt 2521 aaactgcttg attttttttg atgggaggct atttcacacc tgtttaaatt atgtttactt 2581 tcatttttat ttttgaaggc tttttttccc ctccatcctt gatgtctaac tttttgaaag 2641 ccttttaatg ggcaacgtta tgtgaaaggg aatacttgtg ttctagaaat tatttatttt 2701 tgaaagaaag attttatgtt tggatgagtt tgtagatttt ttttttttta ttccattaaa 2761 atatgttgct accatcacac gcaaagattg ccctgctagg tatttccagc catgctgccc 2821 tctcaggcgc tttcctctat ctccattgat tataaagctt tagatttgga gttggctaga 2881 ggaagggcat tggatgtgtt tcccaacctc attggggagc ctggcacaag ttttatgatt 2941 tgaacaataa ttgttacaga gatagatttg tactcctcat ccctcgtgat taggagcaag 3001 aatttacaaa gtagccagcc agaattacag atgcagactc actgtggaac acagaacata 3061 taattggtat aatcaaagaa agtcagaatt tgaatttaat ctcttttatt tcatatgcac 3121 cattattgag tgttaggtat tctttcagat aactcttcta aatatttttt attgctttct 3181 atagcaacac tatcctgatg actttttttt tctttgaaag ggtgagaata ggaagaattc 3241 attattcttg tgcctgacta ttgaaaaata tataaaaatg tgtaacacat tttagacctg 3301 ggaagagatt tgaactagta atctgaaaac ttgagtttgc attctagctc cacctctagc 3361 tatgggactg tgagcaagtg tctttaaact ctgaaccttg gtttttctca tatgtaaaat 3421 aagtgtaata ataactgccc tgttctgtgt tcctctcagg ataattgtca ggatcaaaat 3481 tcatcttatt caactaatat tttgggcata ctttgtacca accagatgct ggggatacag 3541 cagtgaataa aacaaagtcc ctgctcagtg gagtgaaatg aaatacctgt gacagtgttt 3601 tgaaaattgt gaaggaattt agaaatttaa gtttttatgc catccaacac ccataatttt 3661 actgatgagg aagctaaggt ccagaaaggt aaagtggtta gtctaatgtt atctagtgag 3721 ttagaatcaa attgttctta agtttggtat tttttctcct acccaattaa atattttata 3781 atctaggtta tttatcttag tttcctgctc ttctttcctg ttattgcaat actttccctg 3841 tttttgatcc cctagtcacc tttcttttca ctgtaggtat taagtttttt tttcttttga 3901 aaacattcag tgctatcaag cttagtgaaa aagcaaggtt ttttccatcc tacactgatc 3961 taaatttata tctttgcttg accatttacc ttaaatttct ggaaaattaa aacaatacag 4021 ataataacta ctttagaggc tgctttgagg ctaaaaaatg gtatcaaata aagttcttag 4081 cgtgcagtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4141 aaaaaaaaaa aaaaaaaa //