LOCUS BC050284 3265 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens YTH domain family, member 1, mRNA (cDNA clone
MGC:41808 IMAGE:5298438), complete cds.
ACCESSION BC050284
VERSION BC050284.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3265)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3265)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 77 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377749.
FEATURES Location/Qualifiers
source 1..3265
/db_xref="H-InvDB:HIT000053403"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41808 IMAGE:5298438"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3265
/gene="YTHDF1"
/gene_synonym="FLJ20391"
/db_xref="GeneID:54915"
/db_xref="HGNC:HGNC:15867"
CDS 295..1974
/gene="YTHDF1"
/gene_synonym="FLJ20391"
/codon_start=1
/product="YTH domain family, member 1"
/protein_id="AAH50284.1"
/db_xref="GeneID:54915"
/db_xref="HGNC:HGNC:15867"
/translation="MSATSVDTQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQ
SNSYPSMSDPYLSSYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHD
AVFGQPGGLGNNIYQHRFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGG
TVVDGQPGFHSDTLSKAPGMNSLEQGMVGLKIGDVSSSAVKTVGSVVSSVALTGVLSG
NGGTNVNMPVSKPTSWAAIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDN
KGPVPKAPVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNR
NAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEKLKAAHSYNPKEFEWNLKSGRVF
IIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVA
EMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDT
QEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ"
BASE COUNT 780 a 853 c 818 g 814 t
ORIGIN
1 gcgtgcacgc tgacgccgcg cagtctcgtc ccctgccgcc gccgtcgccg ctgctgtcgc
61 cgccgccgcc gccattggag tcgacgcctc ctcagtgcgt ccgcgtcccg ggctcaccgc
121 cgctgccgcc tcgccagggg cccgcgcgcc cagcagccgc cgccgccgcc cggccggcgc
181 ccggggaatt ggcggcgggg cccggggccg cgcgagctag ggtgacaggc ccggcctcta
241 ggggaggccc gagccggcgg gcgccccggc cccgcgtcta gttgttcatg aagcatgtcg
301 gccaccagcg tggacaccca gagaacaaaa ggacaagata ataaagtaca aaatggttcg
361 ttacatcaga aggatacagt tcatgacaat gactttgagc cctaccttac tggacagtca
421 aatcagagta acagttaccc ctcaatgagc gacccctacc tgtccagcta ttacccgccg
481 tccattggat ttccttactc cctcaatgag gctccgtggt ctactgcagg ggaccctccg
541 attccatacc tcaccaccta cggacagctc agtaacggag accatcattt tatgcacgat
601 gctgtttttg ggcagcctgg gggcctgggg aacaacatct atcagcacag gttcaatttt
661 ttccctgaaa accctgcgtt ctcagcatgg gggacaagtg ggtctcaagg tcagcagacc
721 cagagctccg cgtatgggag cagctacacc taccccccga gctccctggg tggcacggtg
781 gttgatgggc agccaggctt tcacagcgac accctcagca aggcccccgg gatgaacagc
841 ctggagcagg gcatggttgg cctgaagatt ggggacgtca gctcctccgc cgtcaagacg
901 gtgggctctg tcgtcagcag cgtggcactg actggtgtcc tttctggcaa cggtgggaca
961 aatgtgaaca tgccagtttc aaagccgacc tcgtgggctg ccattgccag caagcctgca
1021 aaaccacagc ctaaaatgaa aacaaagagc gggcctgtca tggggggtgg gctgccccct
1081 ccacccataa agcataacat ggacattggc acctgggata acaaggggcc tgtgccgaag
1141 gccccagtcc cccagcaggc accctctcca caggctgccc cacagcccca gcaggtggct
1201 cagcctctcc cagcacagcc cccagctttg gctcaaccgc agtatcagag ccctcagcag
1261 ccaccccaga cccgctgggt tgccccacgc aacagaaacg cggcgtttgg gcagagcgga
1321 ggggctggca gcgatagcaa ctctcctgga aacgtccagc ctaattctgc ccccagcgtc
1381 gaatcccacc ccgtccttga aaaactgaag gctgctcaca gctacaaccc gaaagagttt
1441 gagtggaatc tgaaaagcgg gcgtgtgttc atcatcaaga gctactctga ggacgacatc
1501 caccgctcca ttaagtactc catctggtgt agcacagagc acggcaacaa gcgcctggac
1561 agcgccttcc gctgcatgag cagcaagggg cccgtctacc tgctcttcag cgtcaatggg
1621 agtgggcatt tttgtggggt ggccgagatg aagtcccccg tggactacgg caccagtgcc
1681 ggggtctggt ctcaggacaa gtggaagggg aagtttgatg tccagtggat ttttgttaag
1741 gatgtaccca ataaccagct ccggcacatc aggctggaga ataacgacaa caaaccggtc
1801 acaaactccc gggacaccca ggaggtgccc ttagaaaaag ccaagcaagt gctgaaaatt
1861 atcagttcct acaagcacac aacctccatc ttcgacgact ttgctcacta cgagaagcgc
1921 caggaggagg aggaggtggt gcgcaaggaa cggcagagtc gaaacaaaca atgagggcga
1981 accagtttct tacatgttct aacgtttgac tttgaaaaca gtttaaaaca cgtgtgcttg
2041 gtcagctcca gtgtgtcgtc ccgtgcgggg gttgagtgtt gcatctttgc ctttcttgtc
2101 gttgattttt gcccagatgg atctgcattt atttgtactt tttctatgta ttataatcct
2161 gtagaagtca ctaataaagg agtatttttt ttgtcagctt atcaatcaga ctgatctaat
2221 gtgaaatgta agtatcctta aaaacaaagc atctattttg gcagaaattg tgttcttaaa
2281 ttcagtcatt tgatattctg tgagacttca tatttctcat ccctttattg ctttttagca
2341 aacataagaa accatgagtc attttgtcat ttagagtatt ctgataaaat ctcttgaaaa
2401 tactgaaatc aaaaggttaa tgattttttg ttcattctga tttgtcattt tattatctgt
2461 tatcggtcta aagtgctaat ttacccattt gatttttctg ctagacagat aacttttaat
2521 ttttcaaatt tggcagacac tttttttttt ttttgaaaat ctttccttcc agatctgttg
2581 cccactgaac agccacccgt ccctcactgt cctggtgtcc gattgggctg gatggtgttg
2641 gggcatgatg tgtggaggaa ctggaaggtg ctttaggtct ggttcagggt cgggcattct
2701 ttgttgtttg cacatctttt taaattttac accttttctt aagaattcta atgccgtctt
2761 aagtttttat accaataatg ctgagcttta agtgtaggat ctggtagtac agacagtgtg
2821 atggatgatg ctgctggttg taaatttcat cgtgtgtgtc taattttttt tcctgttgaa
2881 tgggtaaaaa caaaacaaaa ctttttttag aagatgaatt tgctgtcatg ttttgtggaa
2941 tgagggaccg ttgagctcac taccacctgg agtttgagtt gaagcatgaa aatggtgccc
3001 atgcctgacg ctccagcgcc tggatctgca cgtgcccttg tagaggatcc ttaccgtcct
3061 agagagcaga cgctttctga aaactacttg ctccaaaaga ccctctgagt taacgtttca
3121 gctgtatcat tagacttgta tttagagcgt gtcacttcct ctgaactgtt actgcctgaa
3181 tggagtcctg gacgacattg ggtttttcct ctaggagaat acaagcctta ataaacaata
3241 ctatttagca aaaaaaaaaa aaaaa
//