LOCUS BC050280 4130 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens integrin, alpha 7, mRNA (cDNA clone MGC:33821
IMAGE:5284443), complete cds.
ACCESSION BC050280
VERSION BC050280.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4130)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4130)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: i Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504752.
FEATURES Location/Qualifiers
source 1..4130
/db_xref="H-InvDB:HIT000053400"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33821 IMAGE:5284443"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4130
/gene="ITGA7"
/db_xref="GeneID:3679"
/db_xref="HGNC:HGNC:6143"
/db_xref="MIM:600536"
CDS 217..3630
/gene="ITGA7"
/codon_start=1
/product="integrin, alpha 7"
/protein_id="AAH50280.1"
/db_xref="GeneID:3679"
/db_xref="HGNC:HGNC:6143"
/db_xref="MIM:600536"
/translation="MAGARSRDPWGASGICYLFGSLLVELLFSRAVAFNLDVMGALRK
EGEPGSLFGFSVALHRQLQPRPQSWLLVGAPQALALPGQQANRTGGLFACPLSLEETD
CYRVDIDQGADMQKESKENQWLGVSVRSQGPGGKIVTCAHRYEARQRVDQILETRDMI
GRCFVLSQDLAIRDELDGGEWKFCEGRPQGHEQFGFCQQGTAAAFSPDSHYLLFGAPG
TYNWKGLLFVTNIDSSDPDQLVYKTLDPADRLPGPAGDLALNSYLGFSIDSGKGLVRA
EELSFVAGAPRANHKGAVVILRKDSASRLVPEVMLSGERLTSGFGYSLAVADLNSDGW
PDLIVGAPYFFERQEELGGAVYVYLNQGGHWAGISPLRLCGSPDSMFGISLAVLGDLN
QDGFPDIAVGAPFDGDGKVFVYHGSSLGVVAKPSQVLEGEAVGIKSFGYSLSGSLDMD
GNQYPDLLVGSMADTAVLFRARPILHVSHEVSIAPRSIDLEQPNCAGGHSVCVDLRVC
FSYIAVPSSYSPTVALDYVLDADTDRRLRGQVPHVTFLSRNLEEPKHQASGTVWLKHQ
HDRVCGDAMFQLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQGLPPVAPILNAHQPS
TQRAEIHFLKQGCGEDKICQSNLQLVHVRFCTRVSDTEFQPLPMDVDGTTALFALSGQ
PVIGLELMVTNLPSDPAQPQADGDDAHEAQLLVMLPDSLHYSGVRALDPAEKPLCLSN
ENASHVECELGNPMKRGAQVTFYLILSTSGISIETTELEVELLLATISEQELHPVSAR
ARVFIELPLSIAGMAIPQQLFFSGVVRGERAMQSERDVGSKVKYEVTVSNQGQSLRTL
GSAFLNIMWPHEIANGKWLLYPMQVELEGGQGPGQKGLCSPRPNILHLDVDSRDRRRR
ELEPPEQQEPGERQEPSMSWWPVSSAEKKKNITLDCARGTANCVVFSCPLYSFDHAAV
LHVWGRLWNSTFLEEYSAVKSLEVIVRANITVKSSIKNLMLRDASTVIPVMVYLDPMA
VVAEGVPWWVILLAVLAGLLVLALLVLLLWKMGFFKRAKHPEATVPQYHAVKIPREDR
QQFKEEKTGTILRNNWGSPRREGPDAHPILAADGHPELGPDGHPGPGTA"
BASE COUNT 805 a 1179 c 1292 g 854 t
ORIGIN
1 gccggagctg cggctgctgt agttgtccta gccggtgctg gggcggcggg gtggcggagc
61 ggcgggcggg cgggagggct ggcggggcga acgtctggga gacgtctgaa agaccaacga
121 gactttggag accagagacg cgcctggggg gacctggggc ttggggcgtg cgagatttcc
181 cttgcattcg ctgggagctc gcgcagggat cgtcccatgg ccggggctcg gagccgcgac
241 ccttgggggg cctccgggat ttgctacctt tttggctccc tgctcgtcga actgctcttc
301 tcacgggctg tcgccttcaa tctggacgtg atgggtgcct tgcgcaagga gggcgagcca
361 ggcagcctct tcggcttctc tgtggccctg caccggcagt tgcagcccag accccagagc
421 tggctgctgg tgggtgctcc ccaggccctg gctcttcctg ggcagcaggc gaatcgcact
481 ggaggcctct tcgcttgccc attgagcctg gaggagactg actgctacag agtggacatc
541 gaccagggag ctgatatgca aaaggaaagc aaggagaacc agtggttggg agtcagtgtt
601 cggagccagg ggcctggggg caagattgtt acctgtgcac acagatatga ggcaaggcag
661 cgagtggacc agatcctgga gacgcgggat atgattggtc gctgctttgt gctcagccag
721 gacctggcca tccgggatga gttggatggt ggggaatgga agttctgtga gggacgcccc
781 caaggccatg aacaatttgg gttctgccag cagggcacag ctgccgcctt ctcccctgat
841 agccactacc tcctctttgg ggccccagga acctataatt ggaaggggtt gctttttgtg
901 accaacattg atagctcaga ccccgaccag ctggtgtata aaactttgga ccctgctgac
961 cggctcccag gaccagccgg agacttggcc ctcaatagct acttaggctt ctctattgac
1021 tcggggaaag gtctggtgcg tgcagaagag ctgagctttg tggctggagc cccccgcgcc
1081 aaccacaagg gtgctgtggt catcctgcgc aaggacagcg ccagtcgcct ggtgcccgag
1141 gttatgctgt ctggggagcg cctgacctcc ggctttggct actcactggc tgtggctgac
1201 ctcaacagtg atggctggcc agacctgata gtgggtgccc cctacttctt tgagcgccaa
1261 gaagagctgg ggggtgctgt gtatgtgtac ttgaaccagg ggggtcactg ggctgggatc
1321 tcccctctcc ggctctgcgg ctcccctgac tccatgttcg ggatcagcct ggctgtcctg
1381 ggggacctca accaagatgg ctttccagat attgcagtgg gtgccccctt tgatggtgat
1441 gggaaagtct tcgtctacca tgggagcagc ctgggggttg tcgccaaacc ttcacaggtg
1501 ctggagggcg aggctgtggg catcaagagc ttcggctact ccctgtcagg cagcttggat
1561 atggatggga accaataccc tgacctgctg gtgggctcca tggctgacac cgcagtgctc
1621 ttcagggcca gacccatcct ccatgtctcc catgaggtct ctattgctcc acgaagcatc
1681 gacctggagc agcccaactg tgctggcggc cactcggtct gtgtggacct aagggtctgt
1741 ttcagctaca ttgcagtccc cagcagctat agccctactg tggccctgga ctatgtgtta
1801 gatgcggaca cagaccggag gctccggggc caggttcccc atgtgacgtt cctgagccgt
1861 aacctggaag aacccaagca ccaggcctcg ggcaccgtgt ggctgaagca ccagcatgac
1921 cgagtctgtg gagacgccat gttccagctc caggaaaatg tcaaagacaa gcttcgggcc
1981 attgtagtga ccttgtccta cagtctccag acccctcggc tccggcgaca ggctcctggc
2041 caggggctgc ctccagtggc ccccatcctc aatgcccacc agcccagcac ccagcgggca
2101 gagatccact tcctgaagca aggctgtggt gaagacaaga tctgccagag caatctgcag
2161 ctggtccacg tccgcttctg tacccgggtc agcgacacgg aattccaacc tctgccaatg
2221 gatgtggatg gaacaacagc cctgtttgca ctgagtgggc agccagtcat tggcctggag
2281 ctgatggtca ccaacctgcc atcggaccca gcccagcccc aggctgatgg ggatgatgcc
2341 catgaagccc agctcctggt catgcttcct gactcactgc actactcagg ggtccgggcc
2401 ctggaccctg cggagaagcc actctgcctg tccaatgaga atgcctccca tgttgagtgt
2461 gagctgggga accccatgaa gagaggtgcc caggtcacct tctacctcat ccttagcacc
2521 tccgggatca gcattgagac cacggaactg gaggtagagc tgctgttggc cacgatcagt
2581 gagcaggagc tgcatccagt ctctgcacga gcccgtgtct tcattgagct gccactgtcc
2641 attgcaggaa tggccattcc ccagcaactc ttcttctctg gtgtggtgag gggcgagaga
2701 gccatgcagt ctgagcggga tgtgggcagc aaggtcaagt atgaggtcac ggtttccaac
2761 caaggccagt cgctcagaac cctgggctct gccttcctca acatcatgtg gcctcatgag
2821 attgccaatg ggaagtggtt gctgtaccca atgcaggttg agctggaggg cgggcagggg
2881 cctgggcaga aagggctttg ctctcccagg cccaacatcc tccacctgga tgtggacagt
2941 agggatagga ggcggcggga gctggagcca cctgagcagc aggagcctgg tgagcggcag
3001 gagcccagca tgtcctggtg gccagtgtcc tctgctgaga agaagaaaaa catcaccctg
3061 gactgcgccc ggggcacggc caactgtgtg gtgttcagct gcccactcta cagctttgac
3121 cacgcggctg tgctgcatgt ctggggccgt ctctggaaca gcacctttct ggaggagtac
3181 tcagctgtga agtccctgga agtgattgtc cgggccaaca tcacagtgaa gtcctccata
3241 aagaacttga tgctccgaga tgcctccaca gtgatcccag tgatggtata cttggacccc
3301 atggctgtgg tggcagaagg agtgccctgg tgggtcatcc tcctggctgt actggctggg
3361 ctgctggtgc tagcactgct ggtgctgctc ctgtggaaga tgggattctt caaacgggcg
3421 aagcaccccg aggccaccgt gccccagtac catgcggtga agattcctcg ggaagaccga
3481 cagcagttca aggaggagaa gacgggcacc atcctgagga acaactgggg cagcccccgg
3541 cgggagggcc cggatgcaca ccccatcctg gctgctgacg ggcatcccga gctgggcccc
3601 gatgggcatc cagggccagg caccgcctag gttcccatgt cccagcctgg cctgtggctg
3661 ccctccatcc cttccacaga gatggctcct tgggatgaag agggtagagt gggctgctgg
3721 tgtcgcatca agatttggca ggatcggctt cctcaggggc acagacctct cccacccaca
3781 agaactcctc ccacccaact tccccttaga gtgctgtgag atgagagtgg gtaaatcagg
3841 gacagggcca tggggtaggg tgagaagggc aggggtgtcc tgatgcaaag gtggggagaa
3901 gggatcctaa tcccttcctc tcccattcac cctgtgtaac aggaccccaa ggacctgcct
3961 ccccggaagt gccttaacct agagggtcgg ggaggaggtt gtgtcactga ctcaggctgc
4021 tccttctcta gtttcccatc tcatctgacc ttagtttgct gccatcagtc tagtggtttc
4081 gtggtttcgt ctatttatta aaaaatattt gagaacaaaa aaaaaaaaaa
//