LOCUS BC050069 3738 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
(CHL1-like helicase homolog, S. cerevisiae), mRNA (cDNA clone
MGC:50970 IMAGE:5271949), complete cds.
ACCESSION BC050069
VERSION BC050069.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3738)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3738)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536328.
FEATURES Location/Qualifiers
source 1..3738
/db_xref="H-InvDB:HIT000053391"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50970 IMAGE:5271949"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3738
/gene="DDX11"
/gene_synonym="CHL1"
/gene_synonym="CHLR1"
/gene_synonym="KRG2"
/gene_synonym="MGC9335"
/db_xref="GeneID:1663"
/db_xref="MIM:601150"
CDS 120..2762
/gene="DDX11"
/gene_synonym="CHL1"
/gene_synonym="CHLR1"
/gene_synonym="KRG2"
/gene_synonym="MGC9335"
/codon_start=1
/product="DDX11 protein"
/protein_id="AAH50069.1"
/db_xref="GeneID:1663"
/db_xref="MIM:601150"
/translation="MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKR
EEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQKKEERDLVD
RLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLETGPEAER
LEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLAQFVH
EVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAEEE
KPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQA
HSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELK
TINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFL
QSLQPRTTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQ
STLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCG
HVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFP
SYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQV
TGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPG
QAPPGKALVENLCMKAVNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWIRARV
EVKATFGPAIAAVQKFHREKSASS"
BASE COUNT 831 a 1034 c 1116 g 757 t
ORIGIN
1 gttgttccgg ctgcctttca ctgaggggac ccgccagttt ctaactcagt ggcgtttgcc
61 ctgattcccg gggcctggct ttcagcgtag caattctgcc ggcgaagaag gaagacttca
121 tggcagagct gtaccgggtt ttggaggctg gcaagattgg gatatttgag agtccaactg
181 gcactgggaa gtccttaagt cttatttgtg gggccctctc ttggctccgt gactttgaac
241 agaagaagcg tgaagaagag gcacgactcc ttgaaactgg aactggcccc ttacatgatg
301 agaaagatga atccctgtgt ctgtcttctt cctgcgaagg ggctgcaggc accccgaggc
361 ctgctggaga accggcctgg gttactcagt ttgtgcagaa gaaagaagag agggacctgg
421 tggaccgact aaaggcggag caggccagga ggaagcagcg agaagaacgc ctgcagcagc
481 tgcagcacag ggtgcagctc aagtatgcag ccaagcgcct gaggcaggaa gaagaagaaa
541 gagagaatct cctccgcctc agcagggaga tgctagagac aggcccggag gctgagcggc
601 tggagcagct ggagtctggg gaggaggagc tggtcctcgc cgaatacgag agtgatgagg
661 agaaaaaggt ggcgagcaga gtggatgagg atgaggatga cctggaggaa gaacacataa
721 ctaagattta ttactgtagt cggacacact cccagctggc ccagtttgtg catgaggtga
781 agaagagccc ctttggcaag gatgttcggc tggtctccct tggctcccgg cagaaccttt
841 gtgtaaatga agacgtgaaa agcctaggtt ctgtgcagct tatcaacgac cgctgtgtgg
901 acatgcagag aagcaggcac gagaagaaga aaggagctga ggaggagaag ccaaagagga
961 ggaggcagga gaagcaggca gcctgcccct tctacaacca cgagcagatg ggccttctcc
1021 gggatgaggc cctggcagag gtgaaggaca tggagcagct gctggccctt gggaaggagg
1081 cccgggcctg tccctattac gggagccgcc ttgccatccc tgcagcccag ctggtggtgc
1141 tgccctatca gatgctgctg catgcggcca ctcggcaggc cgcgggcatc cggctgcagg
1201 accaggtggt gatcatcgac gaggcgcaca acctgatcga caccatcacg ggcatgcaca
1261 gcgtggaggt cagcggctcc cagctctgcc aggcccattc ccagctgctg cagtacgtgg
1321 agcgatacgg gaagcgtttg aaggccaaga acctgatgta cctgaagcag atcctgtatt
1381 tgctggagaa attcgtggct gtgctagggg ggaacattaa gcaaaatccc aatacacaga
1441 gtctgtcaca gacagggacg gagctgaaga ccatcaacga ctttctcttc cagagccaga
1501 tcgacaacat caacctgttc aaggtgcagc gatactgtga gaagagcatg atcagcagaa
1561 agctctttgg attcactgaa cggtacggag cagtgttctc atcccgggag cagcccaaac
1621 tggctgggtt tcagcaattc ctgcagagcc tgcagcccag gacgactgaa gctcttgcag
1681 cccctgcaga cgagagtcag gccagcaccc tgcgaccagc ttctccactg atgcacatcc
1741 aaggcttcct ggcagctctc actacggcca accaggacgg cagggtcatc ctgagccgcc
1801 aaggcagcct cagtcagagc accctgaagt ttttgctcct gaatccagct gtgcactttg
1861 cccaagtggt gaaggaatgc cgggcagtgg tcattgcggg gggtaccatg cagccggtgt
1921 ctgacttccg gcagcagctg ctggcctgtg ccggggtgga agctgagcgc gtggtggagt
1981 tttcctgtgg tcacgtgatc cctccagaca acatcctgcc cctcgtcatc tgcagcggga
2041 tctccaacca gccgctggaa ttcacgttcc agaaaagaga gctgcctcag atgatggacg
2101 aggtgggtcg cattctctgt aacctgtgcg gtgtggttcc tggaggggtg gtctgtttct
2161 tcccctccta cgagtacctg cgccaggtcc atgcccactg ggagaagggt ggcctgctgg
2221 gccgtctggc tgccaggaag aagatattcc aggaacctaa gagcgcacac caggtggagc
2281 aggtgctgct ggcatattcc aggtgcatcc aggcctgtgg ccaggagaga ggccaggtga
2341 caggggccct gctcctctct gtggttggag gaaagatgag tgaagggatc aacttctctg
2401 acaacctagg ccggtgtgtg gtgatggtgg gcatgccctt ccccaacatc aggtctgcag
2461 agctgcagga gaagatggcc tacttggatc aaaccctccc cagagccccc ggccaggcac
2521 ccccagggaa ggctctggtg gagaacctgt gcatgaaggc cgtcaaccag tccataggca
2581 gggccatcag gcaccagaag gattttgcca gcgtagtgct cctggaccag cgatatgccc
2641 ggccccctgt cctggccaag ctgccggcct ggatccgagc ccgtgtggag gtcaaagcta
2701 cctttggccc cgccattgct gctgtgcaga agtttcaccg ggagaagtcg gcctcttcct
2761 gatgggcaac cacaccactg cctggcgccg tgcccttcct ttgtcctgcc cgctggagac
2821 agtgtttgtc gtgggcgtgg tctgcgggga tcctgttaca aaggtgaaac ccaggaggag
2881 agtgtggagt ccagagtgct gccaggaccc aggcacaggc gttagctccc gtaggagaaa
2941 atgggggaat cctgaatgaa cagtgggtcc tggctgtcct tggggcgttc cagggcagct
3001 cccctcctgg aatagaatct ttctttccat cctgcatggc tgagagccag gcttccttcc
3061 tggtctccgc aggaggctgt ggcagctgtg gcatccactg tggcatctcc gtcctgccca
3121 ccttcttaag aggcgagatg gagcaggccc atctgcctct gccctttcta gccaaggtta
3181 tagctgccct ggactgctca ctctctggtc tcaatttaaa atgatccatg gccacagggc
3241 tcctgcccag gggcttgtca ccttcccctc ctccttcctg agtcactcct tcagtagaag
3301 gccctgctcc ctatcctgtc ccacagccct gcctggattt gtatccttgg cttcgtgcca
3361 gttcctccaa gtctatgaca cctccctccc tctcaaccac ttgagcaaac tccaagacac
3421 cttctacccc aacaccagca attatgccaa gggccgttag gctctcaaca tgactataga
3481 gaccccgtgt catcacggag acctttgttc ctgtgggaaa atatccctcc cacctgcaac
3541 agctgcccct gctgactgcg cctgtcttct ccctctgacc ccagagaaag gggctgtggt
3601 cagctgggat cttctgccac catcagggac aaacgggggc aggaggaaag tcactgatgc
3661 ccagatgttt gcatcctgca cagctatagg tccttaaata aaagtgtgct gttggttaaa
3721 aagaaaaaaa aaaaaaaa
//