LOCUS BC050029 3040 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens poly(A)-specific ribonuclease (deadenylation
nuclease), mRNA (cDNA clone MGC:41881 IMAGE:4825218), complete cds.
ACCESSION BC050029
VERSION BC050029.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3040)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3040)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: m Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505610.
FEATURES Location/Qualifiers
source 1..3040
/db_xref="H-InvDB:HIT000053384"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41881 IMAGE:4825218"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3040
/gene="PARN"
/gene_synonym="DAN"
/db_xref="GeneID:5073"
/db_xref="MIM:604212"
CDS 85..2004
/gene="PARN"
/gene_synonym="DAN"
/codon_start=1
/product="PARN protein"
/protein_id="AAH50029.1"
/db_xref="GeneID:5073"
/db_xref="MIM:604212"
/translation="MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALT
NGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSP
DVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALS
YVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLS
WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHA
IANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPF
KDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFIS
MANYLGSFLSPPKIHVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHV
TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT
YAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAPSTVGK
RNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSI
SKNSPATLFEVPDTW"
BASE COUNT 871 a 640 c 721 g 808 t
ORIGIN
1 cggggtcgcc gcggaattcg gcgagtagaa ccgctgaggc gggcgcgggc ccgggtgggg
61 ccaaggttcc ggccactctg cagaatggag ataatcagga gcaattttaa gagtaatctt
121 cacaaagtgt accaggccat agaggaggcc gacttcttcg ccatcgatgg ggagttttca
181 ggaatcagtg atggaccttc agtctctgca ttaacaaatg gttttgacac tccagaagag
241 aggtatcaga agcttaaaaa gcattccatg gactttttgc tatttcagtt tggcctttgc
301 acttttaagt atgactacac agattcaaag tatataacga agtcatttaa cttctatgtt
361 ttcccgaaac ccttcaatag atcctcacca gatgtcaaat ttgtttgtca gagctccagc
421 attgactttc tagcaagcca gggatttgat tttaataaag tttttcgaaa tggaattcca
481 tatttaaatc aggaagaaga aagacagtta agagagcagt atgatgaaaa acgttcacag
541 gcgaatggtg caggagctct gtcctatgta tctcctaaca cttcaaaatg tcctgtcacg
601 attcctgagg atcaaaagaa gtttattgac caagtggtag agaaaataga ggatttatta
661 caaagtgaag aaaacaagaa cttggattta gagccatgta ccgggttcca aagaaaacta
721 atttatcaga ctttgagctg gaagtatccg aaaggcattc atgttgagac tttagaaact
781 gaaaagaagg agcgatatat agttatcagc aaagtagatg aagaagaacg caaaagaaga
841 gagcagcaga aacatgccaa agaacaggag gagctgaatg atgctgtggg attttctaga
901 gtcattcacg ccattgctaa ttcgggaaaa cttgttattg gacacaatat gctcttggac
961 gtcatgcaca cagttcatca gttctactgc cctctgcctg cggacttaag tgagtttaaa
1021 gagatgacaa catgtgtttt ccccagactc ttggatacta aattgatggc cagcacacaa
1081 ccttttaagg atatcattaa caacacatcc cttgcggaat tggaaaagcg gttaaaagag
1141 acacctttca accctcctaa agttgaaagt gccgaaggtt ttccaagtta tgacacagcc
1201 tctgaacaac tccacgaggc aggctacgat gcctacatca cagggctgtg cttcatctcc
1261 atggccaatt acctaggttc ttttctcagc cctccaaaaa ttcatgtgtc tgccagatca
1321 aaactcattg aacctttttt taacaagtta tttcttatga gggtcatgga tatcccctat
1381 ctaaacttgg aaggaccaga cttgcagcct aaacgtgatc atgttctcca tgtgacattc
1441 cccaaagaat ggaaaaccag cgacctttac cagcttttca gtgcctttgg taacattcag
1501 atatcctgga ttgatgacac atcagcattt gtttccctta gccagcccga gcaagtaaag
1561 attgctgtca ataccagcaa atatgcagaa agctatcgga tccaaaccta tgctgaatat
1621 atggggagaa aacaggaaga gaagcagatc aaaagaaagt ggactgaaga tagctggaag
1681 gaggctgaca gcaaacggtt aaacccccag tgcataccct acaccctgca gaatcactat
1741 taccgcaaca atagttttac agctcccagc acagtaggaa agagaaattt gagtcctagt
1801 caagaggaag ctggcctgga ggacggagtg tcaggggaga tttccgacac tgagcttgag
1861 cagaccgatt cctgtgcaga gcccctctca gagggaagga aaaaggccaa gaaattaaaa
1921 agaatgaaga aggagctttc tccagcagga agcatctcga agaacagccc tgccacactc
1981 tttgaagttc ctgacacatg gtaaccaaga cctgagggca gcaaaccgct ggtgctgtcg
2041 ctgtgagcaa gagccggctg gcacatttgg aagccgcact gtatttaact taatcaaatg
2101 tggtatggga ggggttggaa accaagttgt ctcctggggg ggagaaaaca ggttttattt
2161 ttgtggctgt ggttttttcc ccttttttaa tctaactgcc tgttgacatt gacactcatc
2221 acggttgtag gctgtcatga atgtgtacgt gcttaaccag tgaattccgt gttgctcttg
2281 tgaggccttt cctgtcatga cccagtgtgc ttaagaacct gcctgatggg gagtgtcggc
2341 tgtgaaatct gcaaaaagag ctgacattcc agctgctgtg atcatgaatt tgggggtgta
2401 ctgtcctgcc tgtgcatctt ctcgcactga gattttgagg cagttgcagc cctcggttag
2461 tctcccagtg gaaaaatcgg ttgtgcctcc ctgcttccca ccatagctgc ctgaaaacat
2521 gacgctctca agcttgtcct tccttcagga agatgtccac tcatgcccac ccatgagagg
2581 gcttgccgta tgccctggcc tttgggcata tttatgtaga gttcctttct cctaagacgt
2641 gagtttctca tgggggatgt acgagtaaaa aggttaactt ctgttcttat gcgtggcgct
2701 gtgttcactt tccagagtct ctgttcgttt gtttggatgg cggtctcggg gtacggcagc
2761 gtgtgtgcgt acgtgtctgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
2821 gtgtgtgtga aatcgtgcaa atctacaaca tgtcccagcc cattctccgt tgaaacagat
2881 cacagcaacg acaaacgctc atggcgctgc tttgctccac ccgcttcaga tagatcattg
2941 ttagatattt cacatttttg tatggtggaa ataaaaatga aaaatgtatt tccaaaagat
3001 gaaaattaaa aacattttca taggaaaaaa aaaaaaaaaa
//