LOCUS BC050008 3425 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 12, mRNA (cDNA clone MGC:48282 IMAGE:5268732), complete cds. ACCESSION BC050008 VERSION BC050008.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3425) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3425) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: b Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375651. FEATURES Location/Qualifiers source 1..3425 /db_xref="H-InvDB:HIT000099097" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48282 IMAGE:5268732" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3425 /gene="PTPN12" /gene_synonym="PTP-PEST" /gene_synonym="PTPG1" /db_xref="GeneID:5782" /db_xref="HGNC:HGNC:9645" /db_xref="MIM:600079" CDS 277..2619 /gene="PTPN12" /gene_synonym="PTP-PEST" /gene_synonym="PTPG1" /codon_start=1 /product="protein tyrosine phosphatase, non-receptor type 12" /protein_id="AAH50008.2" /db_xref="GeneID:5782" /db_xref="HGNC:HGNC:9645" /db_xref="MIM:600079" /translation="MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFMRLRRLSTKYRT EKIYPTATGEKEENVKKNRYKDILPFDHSRVKLTLKTPSQDSDYINANFIKGVYGPKA YVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPF KISCEDEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSILDMISLMRK YQEHEDVPICIHCSAGCGRTGAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSA VQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKIADGVNEINTENMISSIEPEKQDSPP PKPPRTRSCLVEGDAKEEILQPPEPHPVPPILTPSPPSAFPTVTTVWQDNDRYHPKPV LHMVSSEQHSADLNRNYSKSTELPGKNESTIEQIDKKLERNLSFEIKKVPLQEGPKSF DGNTLLNRGHAIKIKSASPCIADKISKPQELSSDLNVGDTSQNSCVDCSVTQSNKVSV TPPEESQNSDTPPRPDRLPLDEKGHVTWSFHGPENAIPIPDLSEGNSSDINYQTRKTV SLTPSPTTQVETPDLVDHDNTSPLFRTPLSFTNPLHSDDSDSDERNSDGAVTQNKTNI STASATVSAATSTESISTRKVLPMSIARHNIAGTTHSGAEKDVDVSEDSPPPLPERTP ESFVLASEHNTPVRSEWSELQSQERSEQKKSEGLITSENEKCDHPAGGIHYEMCIECP PTFSDKREQISENPTEATDIGFGNRCGKPKGPRDPPSEWT" BASE COUNT 1122 a 638 c 757 g 908 t ORIGIN 1 ggggagaggc ggctgcggct gcggctgcgg ctgctggcgg ggggtggggg ggaggaggaa 61 ccgggaaggg ggggcagggc gagcggagag ctagctgtgt tcctgaggcg cagccgccgc 121 ctagggcggt ggggaggagg agggagccgc ggggcttggc ggggtcggga gggagggacg 181 tgctggggga acgagctggg gaagacggag cgggctctgt gccgggcggg cgggcggcgg 241 gggggccagc gaccgcagcc ggggggacgc gggaggatgg agcaagtgga gatcctgagg 301 aaattcatcc agagggtcca ggccatgaag agtcctgacc acaatgggga ggacaacttc 361 gcccgggact tcatgcggtt aagaagattg tctaccaaat atagaacaga aaagatatat 421 cccacagcca ctggagaaaa agaagaaaat gttaaaaaga acagatacaa ggacatactg 481 ccatttgatc acagccgagt taaattgaca ttaaagactc cttcacaaga ttcagactat 541 atcaatgcaa attttataaa gggcgtctat gggccaaaag catatgtagc aactcaagga 601 cctttagcaa atacagtaat agatttttgg aggatgatat gggagtataa tgttgtgatc 661 attgtaatgg cctgccgaga atttgagatg ggaaggaaaa aatgtgagcg ctattggcct 721 ttgtatggag aagaccccat aacgtttgca ccatttaaaa tttcttgtga ggatgaacaa 781 gcaagaacag actacttcat caggacactc ttacttgaat ttcaaaatga atctcgtagg 841 ctgtatcagt ttcattatgt gaactggcca gaccatgatg ttccttcatc atttgattct 901 attctggaca tgataagctt aatgaggaaa tatcaagaac atgaagatgt tcctatttgt 961 attcattgca gtgcaggctg tggaagaaca ggtgccattt gtgccataga ttatacgtgg 1021 aatttactaa aagctgggaa aataccagag gaatttaatg tatttaattt aatacaagaa 1081 atgagaacac aaaggcattc tgcagtacaa acaaaggagc aatatgaact tgttcataga 1141 gctattgccc aactgtttga aaaacagcta caactatatg aaattcatgg agctcagaaa 1201 attgctgatg gagtgaatga aattaacact gaaaacatga tcagctccat agagcctgaa 1261 aaacaagatt ctcctcctcc aaaaccacca aggacccgca gttgccttgt tgaaggggat 1321 gctaaagaag aaatactgca gccaccggaa cctcatccag tgccacccat cttgacacct 1381 tctccccctt cagcttttcc aacagtcact actgtgtggc aggacaatga tagataccat 1441 ccaaagccag tgttgcatat ggtttcatca gaacaacatt cagcagacct caacagaaac 1501 tatagtaaat caacagaact tccagggaaa aatgaatcaa caattgaaca gatagataaa 1561 aaattggaac gaaatttaag ttttgagatt aagaaggtcc ctctccaaga gggaccaaaa 1621 agttttgatg ggaacacact tttgaatagg ggacatgcaa ttaaaattaa atctgcttca 1681 ccttgtatag ctgataaaat ctctaagcca caggaattaa gttcagatct aaatgtcggt 1741 gatacttccc agaattcttg tgtggactgc agtgtaacac aatcaaacaa agtttcagtt 1801 actccaccag aagaatccca gaattcagac acacctccaa ggccagaccg cttgcctctt 1861 gatgagaaag gacatgtaac gtggtcattt catggacctg aaaatgccat acccatacct 1921 gatttatctg aaggcaattc ctcagatatc aactatcaaa ctaggaaaac tgtgagttta 1981 acaccaagtc ctacaacaca agttgaaaca cctgatcttg tggatcatga taacacttca 2041 ccactcttca gaacacccct cagttttact aatccacttc actctgatga ctcagactca 2101 gatgaaagaa actctgatgg tgctgtgacc cagaataaaa ctaatatttc aacagcaagt 2161 gccacagttt ctgctgccac tagtactgaa agcatttcta ctaggaaagt attgccaatg 2221 tccattgcta gacataatat agcaggaaca acacattcag gtgctgaaaa agatgttgat 2281 gttagtgaag attcacctcc tcccctacct gaaagaactc ctgaatcgtt tgtgttagca 2341 agtgaacata atacacctgt aagatcggaa tggagtgaac ttcaaagtca ggaacgatct 2401 gaacaaaaaa agtctgaagg cttgataacc tctgaaaatg agaaatgtga tcatccagcg 2461 ggaggtattc actatgaaat gtgcatagaa tgtccaccta ctttcagtga caagagagaa 2521 caaatatcag aaaatccaac agaagccaca gatattggtt ttggtaatcg atgtggaaaa 2581 cccaaaggac caagagatcc accttcagaa tggacatgat tcagggagct agaagacact 2641 ttaagttata ctggaaaatt caggtgccac tgaaagccag atttatagta ttccatcttt 2701 aatatgtggg actaacagca gtgtagattg ttaccttaat attttttgct gggaccatct 2761 acctgcctta tactacactt aggaaaaagt attacatatg gtttattttg aaacttcaag 2821 tattattgcc ttaatgtctc ttaaccctgt tacacgctgc ttgtagacat gttaatatag 2881 taataccttt atgatatatt gagtttaagg actactcttt ttctgtttta tcatgtatgc 2941 attattttgt atatgtacag ggcaagtagg tatataattt gataaagttg caattgaaat 3001 attattaaca gaagatgtaa gaaatttctg catggtctaa atctttgtgt actttatttg 3061 taaattattt gccctggagt tttagaaaat agtttctgaa ttttaaactt gctggattca 3121 tgcagccagc tttgcaggtt atcagagatc aaagattgta ataataattt tgtaaattgt 3181 aagcaaaaag ttatttttat attatataca gtctaattgt tcatcctaat tgttcctgtt 3241 ttcatctagt cagagattca gtaagtgcct tggaacaata ttgaattctc ttagcttgtg 3301 tgtgtttctt taatatttga actcaagtgg gattagaaga ctatcaaaat acatgtatgt 3361 ttcaggatat ttgacctgtc attaaaaaaa acaaacagtt ttacagtgcc aaaaaaaaaa 3421 aaaaa //