LOCUS BC049836 1922 bp mRNA linear HUM 22-FEB-2007
DEFINITION Homo sapiens syndecan 2, mRNA (cDNA clone MGC:51965 IMAGE:4931549),
complete cds.
ACCESSION BC049836
VERSION BC049836.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1922)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1922)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: e Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55925658.
FEATURES Location/Qualifiers
source 1..1922
/db_xref="H-InvDB:HIT000053377"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51965 IMAGE:4931549"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1922
/gene="SDC2"
/gene_synonym="SYND2"
/db_xref="GeneID:6383"
/db_xref="HGNC:HGNC:10659"
/db_xref="MIM:142460"
CDS 337..942
/gene="SDC2"
/gene_synonym="SYND2"
/codon_start=1
/product="syndecan 2"
/protein_id="AAH49836.1"
/db_xref="GeneID:6383"
/db_xref="HGNC:HGNC:10659"
/db_xref="MIM:142460"
/translation="MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVY
PIDDDDYASASGSGADEDVESPELTTTRPLPKILLTSAAPKVETTTLNIQNKIPAQTK
SPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFA
IFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA"
BASE COUNT 540 a 390 c 438 g 554 t
ORIGIN
1 gcgggaaagg agtccgcgga ggagcaaaac cacagcagag caagaagagc ttcagagagc
61 agccttcccg gagcaccaac tccgtgtcgg gagtgcagaa accaacaagt gagagggcgc
121 cgcgttcccg gggcgcagct gcgggcggcg ggagcaggcg caggaggagg aagcgagcgc
181 ccccgagccc cgagcccgag tccccgagcc tgagccgcaa tcgctgcggt actctgctcc
241 ggattcgtgt gcgcgggctg cgccgagcgc tgggcaggag gcttcgtttt gccctggttg
301 caagcagcgg ctgggagcag ccggtccctg gggaatatgc ggcgcgcgtg gatcctgctc
361 accttgggct tggtggcctg cgtgtcggcg gagtcgagag cagagctgac atctgataaa
421 gacatgtacc ttgacaacag ctccattgaa gaagcttcag gagtgtatcc tattgatgac
481 gatgactacg cttctgcgtc tggctcggga gctgatgagg atgtagagag tccagagctg
541 acaacaactc gaccacttcc aaagatactg ttgactagtg ctgctccaaa agtggaaacc
601 acgacgctga atatacagaa caagatacct gctcagacaa agtcacctga agaaactgat
661 aaagagaaag ttcacctctc tgactcagaa aggaaaatgg acccagccga agaggataca
721 aatgtgtata ctgagaaaca ctcagacagt ctgtttaaac ggacagaagt cctagcagct
781 gtcattgctg gtggagttat tggctttctc tttgcaattt ttcttatcct gctgttggtg
841 tatcgcatga gaaagaagga tgaaggaagc tatgaccttg gagaacgcaa accatccagt
901 gctgcttatc agaaggcacc tactaaggag ttttatgcgt aaaactccaa cttagtgtct
961 ctatttatga gatcactgaa cttttcaaaa taaagctttt gcatagaata atgaagatct
1021 ttgttttttg ttttcattaa agagccattc tggcacttta atgataaaat cccattgtat
1081 ttaaaacatt tcatgtattt ctttagaaca acataaaatt aaaatttaac atctgcagtg
1141 ttctgtgaat agcagtggca aaatattatg ttatgaaaac cctcgatgtt catggaattg
1201 gtttaaactt ttatgcgcaa atacaaaatg attgtctttt tcctatgact caaagatgaa
1261 agctgtttca tttgtgtcag catgtctcag attgacctta ccaagttggt cttactttgt
1321 taatttatct gttgtcccct tcctctcctc tgccctccct tcttgtgccc ttaaaaccaa
1381 accctatgcc ttttgtagct gtcatggtgc aatttgtctt tggaaaattc agataatggt
1441 aatttagtgt atatgtgatt ttcaaatatg taaactttaa cttccacttt gtataaattt
1501 ttaagtgtca gactatccat tttacacttg ctttattttt cattacctgt agctttgggc
1561 agatttgcaa cagcaaatta atgtgtaaaa ttggattatt actacaaaac cgtttagtca
1621 tatctatcta atcagatctt cttttgggag gatttgatgt aagttactga caagcctcag
1681 caaacccaaa gatgttaaca gtattttaag aagttgctgc agattccttt ggccactgta
1741 tttgttaatt tcttgcaatt tgaaggtacg agtagaggtt taaagaaaaa tcagtttttg
1801 ttcttaaaaa tgcatttaag ttgtaaacgt ctttttaagc ctttgaagtg cctctgattc
1861 tatgtaactt gttgcagact ggtgttaatg agtatatgta acagtttaaa aaaaaaaaaa
1921 aa
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