LOCUS BC049388 3951 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens family with sequence similarity 78, member A, mRNA
(cDNA clone MGC:50920 IMAGE:6050655), complete cds.
ACCESSION BC049388
VERSION BC049388.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3951)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3951)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC049388.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: n Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222124.
FEATURES Location/Qualifiers
source 1..3951
/db_xref="H-InvDB:HIT000053373"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50920 IMAGE:6050655"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3951
/gene="FAM78A"
/gene_synonym="RP11-544A12.6"
/db_xref="GeneID:286336"
/db_xref="HGNC:HGNC:25465"
CDS 401..1192
/gene="FAM78A"
/gene_synonym="RP11-544A12.6"
/codon_start=1
/product="FAM78A protein"
/protein_id="AAH49388.1"
/db_xref="GeneID:286336"
/db_xref="HGNC:HGNC:25465"
/translation="MGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRY
RTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQ
AISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL
TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQD
QPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR"
BASE COUNT 853 a 1195 c 1079 g 824 t
ORIGIN
1 cgcctgcttc ctccgaagac ttcagggaga gtctgcgagc tgccgtcccc gcgtgtgagg
61 cacagaaggg ctggatgtca gaaccgcata attattcatt aaactacaaa ctttttttaa
121 cccaaagaat atcggtgatt tttgtccact gcgaggagaa gaagagagag cccagggctc
181 atgaaatgca gcagaatcct tatttataaa caggccgcgg tagtgatata tgcaacccca
241 gtctactcag tgagttttct atcctatgga tatcggtctt gagagttgag attggagagc
301 agcgccgtct gtactgggtc ctgcagcctc tgtcctttca atgcctggtt ttttctgtga
361 ctgctggcct tccctggaga tcagagcgct cctgtatgcc atgggctgta ttcagagcat
421 cggaggcaaa gccagagtct tccgggaagg gatcacggtg attgatgtga aagcctccat
481 cgaccccgtc cccactagca tcgatgagtc ctccagcgtg gtgctccgct accggacacc
541 ccacttccgg gcctcggccc aggtggtcat gccgcccatc cccaagaagg agacttgggt
601 agttggctgg atccaggcgt gcagccacat ggagttctac aaccagtacg gcgagcaggg
661 catgtccagc tgggagctcc ccgacctcca ggagggcaag atccaagcca tcagcgactc
721 ggacggggtg aactacccct ggtacggcaa caccacagag acctgcacca tcgtgggccc
781 caccaagagg gactccaagt tcatcatcag catgaatgac aacttctacc ccagcgtcac
841 atgggccgtg cccgtcagcg agagcaacgt ggccaagctc accaacatct accgggacca
901 gagcttcacc acctggctgg tggccaccaa cacctccacc aacgacatga tcatcctgca
961 gacgctgcac tggcgcatgc agctcagcat cgaggtgaac cccaaccggc ccctgggcca
1021 gcgcgcccgg ctgcgggagc ccatcgccca ggaccagccc aaaatcctga gcaagaatga
1081 gcccatcccg cccagcgccc tggtcaagcc caatgccaac gatgcccagg tcctcatgtg
1141 gcggcccaag tacgggcagc cgctggtggt gatcccgccc aagcaccggt gacagccagg
1201 accacccgct aggttagact cacaaataat aataccgctg aaaacaaaac tcagactcac
1261 tcttcagtca ttcagcaaga tacaaccatt ctaccctctc cagcgggcgg atctcactgt
1321 gctgatgccc ccgggaaggc ctccccggct ctcggcacct gcttcctttc agggagaggg
1381 gagatctaag caggacagac agaccccacg tgcgccctca gggtgacctc tggtctcctt
1441 gcctctcctt tttctcagtt tcagtcgctc acttgtaaca gattccctga aacactgctt
1501 tttccgtttt ttaaaaaaac tcctcttttg ggggctcagg ggcaggagga gggggagctg
1561 attaggaggg aagctccagc ccccgatcaa agagacagat ccacactgct gccgatttgt
1621 ggcgctggcc ggccttcccc ccaggtccct ccgccctctg tcatgcggcc ttatgtagac
1681 ttgctttgcc aaacttttgc cttaagctga attgaaagga agaaaaccaa tcggagaaag
1741 aaagcaggat ctcttttcta ccggactttt cctcttctgc cagaggtgga gggagggttg
1801 gggtcgcccg cgagagtctc ttgagccctt cttcccggtt gtcttgggag aagggtgagg
1861 atgggcattt agacccgaaa ccagctgctc actctttctt tttggcagaa ataaaaccac
1921 aggtagattc tgcctgaaca gccccttctc tccctccacc cccaggtcgt atccctgcac
1981 ctgcggagag gggctgtgag ctctggcggg gggtggctcc accagtcgcc tggcctcttc
2041 tcccctctct tcccagcagc cttaacttcc cttgggcggc tctaggagga gagaggcagg
2101 ctcctgtgag cccagggaat tttcaccctc tcagtcctca ggacccaccc ccagttgagt
2161 ccctggccct tcctccaggt gtgtggcttt ttccttctcc atccacactg gtcccaaatg
2221 cctgggggcc ggccacctgg accgccgaca cacagcctca atgttagtct caaaggtaag
2281 gaaggcattc acgtcccttc ttgcagggca ttttaagact tgaatcgggt gggccccggc
2341 ccctgtggct ggctggcccc tggtgtactg taaaagggcc aagacagggc tcgttctcag
2401 gggcgcccct cccaggccct cagggcagcg ggacggtgca gtcaggctct gggtgccaca
2461 gtgatggagg tggaaggcac ccaagctcta gggaagtctt gggaggcagt cggccgagcc
2521 cctgcttcct gtcctcaaat aagtgaatcc aggccaaggg ctgggagggc tgggtgggct
2581 tatcgtcgag agggttcaga gccactctgg aggctgggct ggcacagtgg agagcgacag
2641 gtgaggacag acgtctggaa gcccatccct gggacctgcc ctcccttggt cccaggtcac
2701 tggagctcca gggcttactt agtcctgacc cattgtgcca gggttctgag cagtgtcggc
2761 cttgtggcca cttgcagggg ctattagggg acatcccgct gaagccacgc tccttccagc
2821 ttgccaaacc cacagctacc cgcccgggac ccacactcag cctaataatt atcaagcaca
2881 gaaaaccgtc catttagaaa aataatccat ttctgctgca gatgagccac ttgtaagagt
2941 ctccgtgaca gcgtgggacg gtgtgggaac caaagtccct gccctgctcc tttgtccacg
3001 ggctattgcg tttattcaag gggtgcttaa tgaccgttta gccactgccg tcggtctccg
3061 ggcccagctc gtgccaggag gctgtcctgg gacacactgg gctggagctg ccggctggca
3121 cggtgctcag ggggcccctg atgggggcca ggacctcccc gcagaaactg caggttctct
3181 tgtgaggatg gaggccgtgc caccccgaaa ggcagtagcc ttaggggaac agtgggtccc
3241 agctgcatgt ctgaggatgg gtggggacag ggctgggact cagctttcat tcactggaga
3301 cttctccact caggtctttg ttgcactaaa gcagggacag gaccctgggg gttcaggaag
3361 cgggtctcag gccgctggtt tattcctgga ggtggggctg gagaccagaa tggaaagggg
3421 cttcctgagc tgctaggggg tgaaggaccc ccgaacccgc atttcttgag tgagagcaaa
3481 cactcgaggc aggagccagc acccctccca ctgcatgccc ggcccccagc ccaccttgcc
3541 ccctgaccca ccttcacccg tgccccttct ttctgccctt cctcaccgaa gaagggctag
3601 gaacaccctg gagaggctgc aggtccggcc acggacgctc agctgagccc cggtctgctc
3661 cttcagcctc cttgctcttg ttggagcaca ggccccaggc ttcctgccag ggccccgatt
3721 cttcttatgt cctccagccc cgccctggcg tggacatcca ctcactcctt ccagcaataa
3781 gaaccgtcct tggtcgtgga gagtactgtg aaacaaacca atgcacttac caggaggcac
3841 aagactcttg aagaagatgt aaaatgaacc tttttttttt ttacaaaaaa caaaaagcaa
3901 atattcataa agagaaataa aatgtaattt taaagtaaaa aaaaaaaaaa a
//