LOCUS BC049365 3042 bp mRNA linear HTC 09-SEP-2005 DEFINITION Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:5259547), with apparent retained intron. ACCESSION BC049365 VERSION BC049365.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3042) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3042) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (28-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 106 Row: h Column: 17 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..3042 /db_xref="H-InvDB:HIT000099071" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5259547" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" BASE COUNT 874 a 745 c 743 g 680 t ORIGIN 1 ctggcagttg gaggagtggg ctggctttcc tggcggtgat caaggccatt gaccccagcc 61 tggtggacat gaaacaggcc ctggaaaatt ccacacgaga aaatctagag aaggctttca 121 gcatcgcaca ggatgccctg cacatcccca ggctcctgga gccagaagac atcatggttg 181 acacaccaga cgagcagtct atcatgactt acgtggcaca gtttctagaa cgttttccgg 241 agttggaagc cgaagatatt ttcgattcag ataaagaagt tcctatcgaa tccacttttg 301 ttcgcatcaa agaaattcct tctgaacagg agagcaaagt cttcgttctg actgaaaatg 361 gggagcgtac ctacactgtt aaccatgaaa ccagccaccc accaccctcc aaagtctttg 421 tctgtgacaa gcccgagagc atgaaggaat tccgcctgga tggtgtttcc agccatgcgc 481 tgtcagacag ctccaccgag ttcatgcacc agattattga ccaggtcctg caagggggcc 541 caggtaagac cagcgacatc agtgagccat ctccagaatc ctccatttta tcatccagaa 601 aggagaacgg gaggtccaac tctttgccga tcaagaaaac agttcacttt gaggctgaca 661 cctacaagga tcctttctgc agtaagaacc tgtccctttg ctttgaaggg agcccaagag 721 tggcaaagga atcattgagg caggatggac atgtcttggc agttgaggtt gctgaggaaa 781 aggaacagaa acaggaatcc tcgaagattc cagaatcctc ctctgacaag gtcgctggtg 841 acattttttt ggtggagggc acaaacaata attctcagtc ttcttcctgt aatggtgctt 901 tagagagtac agcccgccac gatgaagaaa gtcactctct ttcaccccca ggagaaaata 961 ctgtgatggc cgattccttc cagatcaagg ttaacctgat gactgtagaa gctttagagg 1021 agggagacta ttttgaagcc atcccattaa aagcctcaaa atttaacagc gacctaatag 1081 attttgcttc taccagccag gctttcaaca aagttccttc acctcatgag acaaaacctg 1141 acgaggatgc tgaggctttt gagaatcatg ctgaaaaact aggtaaaagg agtattaaat 1201 ctgctcacaa aaagaaggat tcgccagagc ctcaagttaa gatggacaaa catgaacctc 1261 atcgggactc cggagaagaa gctgaaggct gtccttcagc cccagaagag acaccagtgg 1321 ataaaaagcc agaggtgcat gaaaaggcca agagaaagtc cacccgtcct cattatgagg 1381 aagagggaga agacgatgac ctccagggtg tgggcgagga attatcttcc agccccccaa 1441 gcagctgtgt cagcttggag acccttggga gtcacagcga agaaggcctg gatttcaagc 1501 cctccccacc cctctcaaag gtttccgtca ttccccacga cctcttctat ttcccacact 1561 atgaggttcc cctggctgca gttttggagg cttatgtaga agacccggag gatctaaaaa 1621 atgaagaaat ggatctcgaa gagccagagg gctatatgcc agacctggac tccagggagg 1681 aggaggccga tggctctcag agcagctcca gttcctcggt gccaggagag agcctcccca 1741 gtgccagcga ccaggtgctg tatctcagca ggggtggtgt gggtaccaca ccagcctcag 1801 aacccgctcc actggccccc catgaggacc accagcaaag ggagaccaaa gagaatgacc 1861 ccatggacag ccatcagtcc caggaatccc caaacctgga aaacatagca aaccccctag 1921 aagaaaatgt aacgaaagaa tcaatcagta gtaaaaaaaa ggaaaaaagg aaacatgtgg 1981 accacgtaga aagttcacta tttgtagcac caggaagtgt tcaatcctca gatgacctag 2041 aagaagacag tagcgactac agcattcctt ccaggactag tcacagtgac tccagcattt 2101 accttcgacg acatactcat aggtcttcgg aatcggttag tatgtgaatt tcttctcttt 2161 ccgcacggcc cctgctaatc aattcctttc catccttcct cctccccagc ccagagcttt 2221 gaaattactg gcatgcaaca gctatacttt tggatagaag acaagcagat tggaacctta 2281 tcattaagca cagtccgatc ggatatccgg tttgggcaat aagagatgta aataaagtga 2341 ggattttaaa gcccaaaggc ctccttgcta taaaaacgca cccaaaacgc ctcacctgga 2401 ccccgcgcgc acccagaagg atcacgttca gagacagagg tgcaacatga gtcaaggtcc 2461 gatggacagt ggcacgtgct cagtagcaga tgtgttagaa cccggagcag cacaccccaa 2521 tccgggttcc gggtggtggg gtctctcgca ctcacaaggg aggggcttag gggaggaggt 2581 agaggaatgt atattgttta gcactttgat tttggatcta gacgctggcg gtattgagaa 2641 atgcccggca tgctcggctt tgtgtgttta aaatcgtttt atcttctgtt tcagagattt 2701 catctttact aattgggttg cgggggcttt tgtttataaa tttcactgta ggatcatttt 2761 agctatgttc agttgaggaa cgcagcagat ctggatgaca gaagaaaccg aatattaacc 2821 aggaaggcca acagctcagg agaagccatg tcactgggga gccacagccc gcagagtgac 2881 tccctgacac agcttgtcca gcagccggat atgatgtatt ttattctctt cctgtggctc 2941 ctggtgtact gcttgctgct cttcccacaa ctggatgtta gcaggctctg atacgtgtgt 3001 ctggataata aaaaagacag gaccccaaaa aaaaaaaaaa aa //