LOCUS BC049365 3042 bp mRNA linear HTC 09-SEP-2005
DEFINITION Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA
clone IMAGE:5259547), with apparent retained intron.
ACCESSION BC049365
VERSION BC049365.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3042)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3042)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: h Column: 17
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3042
/db_xref="H-InvDB:HIT000099071"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5259547"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 874 a 745 c 743 g 680 t
ORIGIN
1 ctggcagttg gaggagtggg ctggctttcc tggcggtgat caaggccatt gaccccagcc
61 tggtggacat gaaacaggcc ctggaaaatt ccacacgaga aaatctagag aaggctttca
121 gcatcgcaca ggatgccctg cacatcccca ggctcctgga gccagaagac atcatggttg
181 acacaccaga cgagcagtct atcatgactt acgtggcaca gtttctagaa cgttttccgg
241 agttggaagc cgaagatatt ttcgattcag ataaagaagt tcctatcgaa tccacttttg
301 ttcgcatcaa agaaattcct tctgaacagg agagcaaagt cttcgttctg actgaaaatg
361 gggagcgtac ctacactgtt aaccatgaaa ccagccaccc accaccctcc aaagtctttg
421 tctgtgacaa gcccgagagc atgaaggaat tccgcctgga tggtgtttcc agccatgcgc
481 tgtcagacag ctccaccgag ttcatgcacc agattattga ccaggtcctg caagggggcc
541 caggtaagac cagcgacatc agtgagccat ctccagaatc ctccatttta tcatccagaa
601 aggagaacgg gaggtccaac tctttgccga tcaagaaaac agttcacttt gaggctgaca
661 cctacaagga tcctttctgc agtaagaacc tgtccctttg ctttgaaggg agcccaagag
721 tggcaaagga atcattgagg caggatggac atgtcttggc agttgaggtt gctgaggaaa
781 aggaacagaa acaggaatcc tcgaagattc cagaatcctc ctctgacaag gtcgctggtg
841 acattttttt ggtggagggc acaaacaata attctcagtc ttcttcctgt aatggtgctt
901 tagagagtac agcccgccac gatgaagaaa gtcactctct ttcaccccca ggagaaaata
961 ctgtgatggc cgattccttc cagatcaagg ttaacctgat gactgtagaa gctttagagg
1021 agggagacta ttttgaagcc atcccattaa aagcctcaaa atttaacagc gacctaatag
1081 attttgcttc taccagccag gctttcaaca aagttccttc acctcatgag acaaaacctg
1141 acgaggatgc tgaggctttt gagaatcatg ctgaaaaact aggtaaaagg agtattaaat
1201 ctgctcacaa aaagaaggat tcgccagagc ctcaagttaa gatggacaaa catgaacctc
1261 atcgggactc cggagaagaa gctgaaggct gtccttcagc cccagaagag acaccagtgg
1321 ataaaaagcc agaggtgcat gaaaaggcca agagaaagtc cacccgtcct cattatgagg
1381 aagagggaga agacgatgac ctccagggtg tgggcgagga attatcttcc agccccccaa
1441 gcagctgtgt cagcttggag acccttggga gtcacagcga agaaggcctg gatttcaagc
1501 cctccccacc cctctcaaag gtttccgtca ttccccacga cctcttctat ttcccacact
1561 atgaggttcc cctggctgca gttttggagg cttatgtaga agacccggag gatctaaaaa
1621 atgaagaaat ggatctcgaa gagccagagg gctatatgcc agacctggac tccagggagg
1681 aggaggccga tggctctcag agcagctcca gttcctcggt gccaggagag agcctcccca
1741 gtgccagcga ccaggtgctg tatctcagca ggggtggtgt gggtaccaca ccagcctcag
1801 aacccgctcc actggccccc catgaggacc accagcaaag ggagaccaaa gagaatgacc
1861 ccatggacag ccatcagtcc caggaatccc caaacctgga aaacatagca aaccccctag
1921 aagaaaatgt aacgaaagaa tcaatcagta gtaaaaaaaa ggaaaaaagg aaacatgtgg
1981 accacgtaga aagttcacta tttgtagcac caggaagtgt tcaatcctca gatgacctag
2041 aagaagacag tagcgactac agcattcctt ccaggactag tcacagtgac tccagcattt
2101 accttcgacg acatactcat aggtcttcgg aatcggttag tatgtgaatt tcttctcttt
2161 ccgcacggcc cctgctaatc aattcctttc catccttcct cctccccagc ccagagcttt
2221 gaaattactg gcatgcaaca gctatacttt tggatagaag acaagcagat tggaacctta
2281 tcattaagca cagtccgatc ggatatccgg tttgggcaat aagagatgta aataaagtga
2341 ggattttaaa gcccaaaggc ctccttgcta taaaaacgca cccaaaacgc ctcacctgga
2401 ccccgcgcgc acccagaagg atcacgttca gagacagagg tgcaacatga gtcaaggtcc
2461 gatggacagt ggcacgtgct cagtagcaga tgtgttagaa cccggagcag cacaccccaa
2521 tccgggttcc gggtggtggg gtctctcgca ctcacaaggg aggggcttag gggaggaggt
2581 agaggaatgt atattgttta gcactttgat tttggatcta gacgctggcg gtattgagaa
2641 atgcccggca tgctcggctt tgtgtgttta aaatcgtttt atcttctgtt tcagagattt
2701 catctttact aattgggttg cgggggcttt tgtttataaa tttcactgta ggatcatttt
2761 agctatgttc agttgaggaa cgcagcagat ctggatgaca gaagaaaccg aatattaacc
2821 aggaaggcca acagctcagg agaagccatg tcactgggga gccacagccc gcagagtgac
2881 tccctgacac agcttgtcca gcagccggat atgatgtatt ttattctctt cctgtggctc
2941 ctggtgtact gcttgctgct cttcccacaa ctggatgtta gcaggctctg atacgtgtgt
3001 ctggataata aaaaagacag gaccccaaaa aaaaaaaaaa aa
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