LOCUS BC048971 2210 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens stearoyl-CoA desaturase 5, mRNA (cDNA clone
IMAGE:5300929), partial cds.
ACCESSION BC048971
VERSION BC048971.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2210)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2210)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: p Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2210
/db_xref="H-InvDB:HIT000099028"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5300929"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..2210
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="FLJ21032"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="IMGT/GENE-DB:21088"
/db_xref="MIM:608370"
CDS <1..407
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="FLJ21032"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/codon_start=3
/product="SCD5 protein"
/protein_id="AAH48971.1"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="IMGT/GENE-DB:21088"
/db_xref="MIM:608370"
/translation="ELMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNS
AAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFGLNFNPTTWFI
DFMCWLGLATDRKRATKPMIEARKARTGDSSA"
BASE COUNT 590 a 458 c 483 g 679 t
ORIGIN
1 tggagctcat gtgctttgtg gtccccacgc tggtgccctg gtacatctgg ggagagagtc
61 tgtggaattc ctacttcttg gcctctattc tccgctatac catctcactc aacatcagct
121 ggctggtcaa cagcgcagcc cacatgtatg gaaaccggcc ctatgacaag cacatcagcc
181 ctcggcagaa cccactcgtc gctctgggtg ccattggtga aggcttccat aattaccatc
241 acacctttcc ctttgactac tctgcgagtg aatttggctt aaattttaac ccaaccacgt
301 ggttcattga tttcatgtgc tggctggggc tggccactga ccgcaaacgg gcaaccaagc
361 cgatgatcga ggcccggaag gccaggactg gagacagcag tgcttgaact tggaacagcc
421 atcccacatg tctgccgttg caacctcggt tcatggcttt ggttacaata gctctcttgt
481 acattggatc gtgggagggg gcagagggtg gggaaggaac gagtcaatgt ggtttgggaa
541 tgtttttgtt tatctcaaaa taatgttgaa atacaattat caatgaaaaa actttcgttt
601 tttttttttg tttgttttgt ttttgagaca gagtctcact ctgtcaccca ggctggagtg
661 cagtggcgca gtctcggctc actgcagcct ccacctacct ggttcaagca attctcctgc
721 ctcagcctcc tgagtagctg agattacagg agcctgccac cacacccagc taattttttt
781 gtatttttag tagagacagg gtttcatcat gttggccaga ctggcctcga attcctgacc
841 tcaggcaatc cacccgcctc ggcatcccaa agagctggga ttacaggcgt gagccaccgc
901 accctgccga aaaaaacttt ttttttttga gacggaggct cgctctgtcc cccaggctgg
961 agtgcagtgg cgagatctca gctcactgta agctccgcct cccgggttca cgccattctc
1021 ctgcctcagc ctcccgagta gctgggagcc agcgcgccca gcctaaaaaa cttttcaagt
1081 caatattact acgatttaac attagagtgt ggacatgtga tttaatcgct atagctaaaa
1141 tacgtcaaat atacgttgtc atgtgcttga acatgatgct aaccctgaca ggatgaagga
1201 aagtaatatt ctttcagtgt agttcaggag agcatttgtt ttcttttcta ccaattaacc
1261 catcattgct tttaaacaac catctgaagg agcagagagg cagggtagaa gacagaaggg
1321 ggatctatgt ggtaactaaa gaatgtttct gttttgttaa ttattgtgtg tgtgtggttt
1381 tattgtttgc ttaagagaat caaaaactga aaaaaatgag aatacaggaa atggctcttg
1441 tttatttttt tgctgtgttt acagcttgtt aatgctctac tgtctttgtt tcaagagaga
1501 tttgttcact gcccagctcg ttttgtgtcc tgagccctat ggccagccaa ccttataaat
1561 catgcctgtt tagatgtttg attttgttct gtttgctatt gttatcttaa aggtgtataa
1621 ctctgacatg ccagacatca aattaagctc aaattaagct ctcgtttaaa tgtttaagca
1681 cctaatttat attctaattg atcccagcca ctgatgcatg tactttagct acttctgcta
1741 aataagcata ttaattttcc acatcagacc atcagatctt gagaaccaac agttatctag
1801 aattccgtgt ctactaatgt ttcacctgca tgcagccttc attaattttg tagcaaaata
1861 taaagtgatc attatgtagc ttctggatta aaaaaatttg tgtgtgaagt tgctttgtaa
1921 agtgcatgtg gaattaatgg gacagtgtgc cctttgtgtt agatgttaga gcaaaagaaa
1981 gggcttatag tgttagtatt ggagcacttt gaagatagat attttcagaa aagatgtagg
2041 atttaaaagt taaattttaa attttagaaa aagatatgat ggcaattgga aatagtcaca
2101 atgaagttct tcatccagta ggtgtttaac agtgttattt tgccactggt aatgtgtaaa
2161 ctgtgagtga tttacaataa atgattatga attcaaaaaa aaaaaaaaaa
//