LOCUS BC048959 2167 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA
clone IMAGE:5261610), partial cds.
ACCESSION BC048959
VERSION BC048959.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2167)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2167)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: h Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035676.
FEATURES Location/Qualifiers
source 1..2167
/db_xref="H-InvDB:HIT000099024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5261610"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..>2167
/gene="ARID4B"
/gene_synonym="BCAA"
/gene_synonym="BRCAA1"
/gene_synonym="RBBP1L1"
/gene_synonym="SAP180"
/db_xref="GeneID:51742"
/db_xref="HGNC:HGNC:15550"
/db_xref="MIM:609696"
CDS 460..>2167
/gene="ARID4B"
/gene_synonym="BCAA"
/gene_synonym="BRCAA1"
/gene_synonym="RBBP1L1"
/gene_synonym="SAP180"
/codon_start=1
/product="ARID4B protein"
/protein_id="AAH48959.1"
/db_xref="GeneID:51742"
/db_xref="HGNC:HGNC:15550"
/db_xref="MIM:609696"
/translation="MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRH
DSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLR
RSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSD
EDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFK
DGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSS
EAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLG
YRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYG
FEEYCRSANIEFQMALPEKVVNKQCKECENVKEIKVKEENETEIKEIKMEEERNIIPR
EEKPIEDEIERKENIKPSLGSKKNLLESIPTHSDQEKEVNIKKPEDNENLDDKDDDTT
RVDESLNIKVEAEEEKAKSGYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKEKDKK
KKK"
BASE COUNT 752 a 389 c 545 g 481 t
ORIGIN
1 tttgcccgtc agtcgagtca ggagtgagga gctcggtcgc cgaagcggag ggagactctt
61 gagcttcatc ttgccgccgc cacggccacc gcctggacct ttgcccggag ggagctgcag
121 agggtccatc gccgccgtcc tctggagggc agcgcgattg ggggcccgga cctccagtcc
181 gggggggatt tttcgtcgtc cccctccccc caaccaggga gcccgagcgg ccgccaaaca
241 aaggtaccag tcgccgccgc gggaggagga ggagccggag cctctgcctc agcagccgct
301 ggacccgccg cccttcttcc ccatctctcc cccgggcctg ctggttttgg gggggagaag
361 gagagagggg actctggacg tgccagggtc agatctcgcc tccgaggaag gtgcagctga
421 acctggtgtt ttagaggata ccttggtccc agagtcatca tgaaggccct tgatgagcct
481 ccctatttga cagtgggcac tgatgtgagt gctaaataca gaggagcctt ttgtgaagcc
541 aagatcaaga cagcaaaaag acttgtcaaa gtcaaggtga catttagaca tgattcttca
601 acagtggaag ttcaggatga ccacataaag ggcccactaa aggtaggagc tattgtggaa
661 gtgaagaatc ttgatggtgc atatcaggaa gctgttatca ataaactaac agatgcgagt
721 tggtacactg tagtttttga tgacggagat gagaagacac tgagacgatc ttcactgtgc
781 ctgaaaggag agaggcattt tgctgaaagt gaaacattag accagctccc actcaccaac
841 cctgagcatt ttggcactcc agtcatagga aagaaaacaa atagaggaag aagatctaat
901 catataccag aggaagagtc ttcatcatcc tccagtgatg aagatgagga tgataggaaa
961 cagattgatg agctactagg caaagttgta tgtgtagatt acattagttt ggataaaaag
1021 aaagcactgt ggtttcctgc attggtggtt tgtcctgatt gtagtgatga gattgctgta
1081 aaaaaggaca atattcttgt tcgatctttc aaagatggaa aatttacttc agttccaaga
1141 aaagatgtcc atgaaattac tagtgacact gcaccaaagc ctgatgctgt tttaaagcaa
1201 gcctttgaac aggcacttga atttcacaaa agtagaacta ttcctgctaa ctggaagact
1261 gaattgaaag aagatagctc tagcagtgaa gcagaggaag aagaggagga ggaagatgat
1321 gaaaaagaaa aggaggataa tagcagtgaa gaagaagaag aaatagaacc atttccagaa
1381 gaaagggaga actttcttca gcaattgtac aaatttatgg aagatagagg tacacctatt
1441 aacaaacgac ctgtacttgg atatcgaaat ttgaatctct ttaagttatt cagacttgta
1501 cacaaacttg gaggatttga taatattgaa agtggagctg tttggaaaca agtctaccaa
1561 gatcttggaa tccctgtctt aaattcagct gcaggataca atgttaaatg tgcttataaa
1621 aaatacttat atggttttga ggagtactgt agatcagcca acattgaatt tcagatggca
1681 ttgccagaga aagttgttaa caagcaatgt aaggagtgtg aaaatgtaaa agaaataaaa
1741 gttaaggagg aaaatgaaac agagatcaaa gaaataaaga tggaggagga gaggaatata
1801 ataccaagag aagaaaagcc tattgaggat gaaattgaaa gaaaagaaaa tattaagccc
1861 tctctgggaa gtaaaaagaa tttattagaa tctataccta cacattctga tcaggaaaaa
1921 gaagttaaca ttaaaaaacc agaagacaat gaaaatctgg atgacaaaga tgatgacaca
1981 actagggtag atgaatccct caacataaag gtagaagctg aggaagaaaa agcaaaatct
2041 ggatacgatg aatggattaa agcagataaa atagtaagac ctgctgataa aaatgtgcca
2101 aagataaaac atcggaagaa aataaagaat aaattagaca aagaaaaaga caaaaaaaaa
2161 aaaaaaa
//