LOCUS BC048331 3307 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peroxisomal biogenesis factor 6, mRNA (cDNA clone
MGC:54056 IMAGE:5189685), complete cds.
ACCESSION BC048331
VERSION BC048331.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3307)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3307)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: h Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361243.
FEATURES Location/Qualifiers
source 1..3307
/db_xref="H-InvDB:HIT000053328"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54056 IMAGE:5189685"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3307
/gene="PEX6"
/gene_synonym="PAF-2"
/gene_synonym="PAF2"
/gene_synonym="PXAAA1"
/db_xref="GeneID:5190"
/db_xref="HGNC:HGNC:8859"
/db_xref="MIM:601498"
CDS 17..2959
/gene="PEX6"
/gene_synonym="PAF-2"
/gene_synonym="PAF2"
/gene_synonym="PXAAA1"
/codon_start=1
/product="peroxisomal biogenesis factor 6"
/protein_id="AAH48331.1"
/db_xref="GeneID:5190"
/db_xref="HGNC:HGNC:8859"
/db_xref="MIM:601498"
/translation="MALAVLRVLEPFPTETPPLAVLLPPGGPWPAAELGLVLALRPAG
ESPAGPALLVAALEGPDAGTEEQGPGPPQLLVSRALLRLLALGSGAWVRARAVRRPPA
LGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGPRVLETRPALQGLLGPGTRLAVTEL
RGRARLCPESGDSSRPPPPPVVSSFAVSGTVRRLQGVLGGTGDSLGVSRSCLRGLGLF
QGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRLGPGSGPLGEPLADGLALVPAT
LAFNLGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGPPFARELHIEIVSSPHYSTN
GNYDGVLYRHFQIPRVVQEGDVLCVPTIGQVEILEGSPEKLPRWREMFFKVKKTVGEA
PDGPASAYLADTTHTSLYMVGSTLSPVPWLPSEESTLWSSLSPPGLEALVSELCAVLK
PRLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVE
TKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPP
LMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLA
RRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQA
LEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGL
LLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPC
IIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDP
ALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADL
YSLCSDAMTAALKRRVHDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKR
IQRKFAAC"
BASE COUNT 605 a 978 c 1059 g 665 t
ORIGIN
1 ttggtgtcct gtcaccatgg cgctggctgt cttgcgggtc ctggagccct ttccgaccga
61 gacacccccg ttggcagtgc tgctgccacc cgggggcccg tggccggcgg cggagctggg
121 cctggtgctg gccctgaggc ctgcagggga gagcccggca gggccggcgc tgctggtggc
181 agccctggag gggccggacg cgggcaccga agagcagggt cccgggccgc cgcagctact
241 ggttagccgc gcgctgctgc ggctcctggc actgggctcc ggggcctggg tgcgggcgcg
301 ggcggtgcgg cggcccccgg cgctaggttg ggcactgctt ggcacctcgc tggggcctgg
361 gctcggaccg cgagtcgggc cgctgctggt gaggcgcgga gagaccctcc cagtgcccgg
421 accgcgggtg ctggagacgc ggccggcgtt gcaagggctg ctgggcccag ggactcggct
481 ggctgtgact gagctccgcg ggcgggccag actgtgtcca gagtctgggg acagcagtcg
541 gcccccaccc ccgcccgtgg tgtcctcctt tgcggtttct ggcacagtgc ggcgactcca
601 gggagttctg ggagggactg gagattcact aggggtgagc cggagctgtc tccgtggcct
661 tggcctcttc cagggcgaat gggtgtgggt ggcccaggcc agagagtcat cgaacacttc
721 acagccgcac ttggctaggg tgcaggtcct agaacctcgc tgggacctct ctgatagact
781 gggacccggc tctggaccgc tgggagagcc cctcgctgac ggactggcgc ttgtccctgc
841 cactttggct tttaatcttg gctgtgaccc cctggaaatg ggagagctca gaattcagag
901 gtacttggaa ggctccatcg cccctgaaga caaaggaagc tgctcattgc tgcctgggcc
961 tccatttgcc agagagttac acatcgaaat tgtgtcttct ccccactaca gcactaatgg
1021 aaattatgac ggtgttcttt accggcactt tcagataccc agggtagtcc aggaagggga
1081 tgttctatgt gtgccaacaa ttgggcaagt agagatcctg gaaggaagtc cagagaaact
1141 gcccaggtgg cgggaaatgt tttttaaagt gaagaaaaca gttggggaag ctccagatgg
1201 accagccagt gcctacttgg ccgacaccac ccatacctcc ttgtacatgg tgggttctac
1261 cctgagccct gttccatggc tcccttcaga ggaatccact ctctggagca gtttgtctcc
1321 tccaggcctg gaggccttgg tgtctgaact ctgtgctgtc ctgaagcctc gcctccagcc
1381 agggggtgcc ctgctgacag gaactagcag tgtccttcta cggggccccc caggctgtgg
1441 gaagaccaca gtagttgctg ctgcctgtag tcaccttggg ctccacttac tgaaggtgcc
1501 ctgctccagc ctctgtgcag aaagtagtgg ggctgtggag acaaaactgc aggccatctt
1561 ctcccgggcc cgccgttgcc ggcctgcagt cctgttgctc acagctgtgg accttctggg
1621 ccgggaccgt gatgggctgg gtgaggatgc ccgtgtgatg gctgtgctgc gtcacctcct
1681 cctcaatgag gaccccctca acagctgccc tcccctcatg gttgtggcca ccacaagccg
1741 ggcccaggac ctgcctgctg atgtgcagac agcatttcct catgagctcg aggtgcctgc
1801 tctgtcagag gggcagcggc tcagcatcct gcgggccctc actgcccacc ttcccctggg
1861 ccaggaggtg aacttggcac agctagcacg gcggtgtgca ggctttgtgg taggggatct
1921 ctatgccctt ctgacccaca gcagccgggc agcctgcacc aggatcaaga actcaggttt
1981 ggcaggtggc ttgactgagg aggatgaggg ggagctgtgt gctgccggct ttcctctcct
2041 ggctgaggac tttgggcagg cactggagca actgcagaca gctcactccc aggccgttgg
2101 agcccccaag atcccctcag tgtcctggca tgatgtgggt gggctgcagg aggtgaagaa
2161 ggagatcctg gagaccattc agctccccct ggagcaccct gagctactga gcctgggcct
2221 gagacgctca ggccttctgc tccatgggcc ccctggcacc ggcaagaccc ttctggccaa
2281 ggcagtagcc actgagtgca gccttacctt cctcagcgtg aaggggccag agctcattaa
2341 catgtatgtg ggccaaagtg aggagaatgt gcgggaagta tttgccaggg ccagggctgc
2401 agctccatgc attatcttct ttgatgaact ggactctttg gccccaagcc gggggcgaag
2461 tggagattct ggaggagtga tggacagggt ggtgtctcag ctccttgccg agctagatgg
2521 gctgcacagc actcaggatg tgtttgtgat tggagccacc aacagaccag atctcctgga
2581 ccctgccctt ctgcggcctg gcagatttga caagctggtg tttgtggggg caaatgagga
2641 ccgggcctcc cagctacgcg ttctaagtgc catcacacgc aaattcaagc tagagccatc
2701 tgtgagcctg gtaaacgtgc tagattgctg ccctccccag ctgacgggcg cggacctcta
2761 ctctctctgc tctgatgcta tgacagctgc cctcaaacgc agggttcatg acctggagga
2821 agggctggag ccaggtagct cagcactgat gctcaccatg gaggacttgc tgcaggctgc
2881 cgcccggctg caaccctcag tcagtgagca ggagctgctc cggtacaagc gcatccagcg
2941 caagtttgct gcctgctagg agccccccag ggtctgggac cccgctcagc atggctgcag
3001 gtaccttgat agcccacaga gagatctggg aaggaagggc tcctcctcag gctgttgcca
3061 acccacctgg aggccacctc cctccaggag atcccagggt gcaaagtggc attgagacag
3121 cagcaacagc tcaagagata tctcctgcct acttgcccct ccttccaggc cggctctaag
3181 agaaaggccc atctactcag gaagagggcc agggccttgg gttctgggga ttgggccctg
3241 agagggctag ttctgtggct gaaaataaag catgtcctgc cccctaaaaa aaaaaaaaaa
3301 aaaaaaa
//