LOCUS BC048331 3307 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens peroxisomal biogenesis factor 6, mRNA (cDNA clone MGC:54056 IMAGE:5189685), complete cds. ACCESSION BC048331 VERSION BC048331.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3307) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3307) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 93 Row: h Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361243. FEATURES Location/Qualifiers source 1..3307 /db_xref="H-InvDB:HIT000053328" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:54056 IMAGE:5189685" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3307 /gene="PEX6" /gene_synonym="PAF-2" /gene_synonym="PAF2" /gene_synonym="PXAAA1" /db_xref="GeneID:5190" /db_xref="HGNC:HGNC:8859" /db_xref="MIM:601498" CDS 17..2959 /gene="PEX6" /gene_synonym="PAF-2" /gene_synonym="PAF2" /gene_synonym="PXAAA1" /codon_start=1 /product="peroxisomal biogenesis factor 6" /protein_id="AAH48331.1" /db_xref="GeneID:5190" /db_xref="HGNC:HGNC:8859" /db_xref="MIM:601498" /translation="MALAVLRVLEPFPTETPPLAVLLPPGGPWPAAELGLVLALRPAG ESPAGPALLVAALEGPDAGTEEQGPGPPQLLVSRALLRLLALGSGAWVRARAVRRPPA LGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGPRVLETRPALQGLLGPGTRLAVTEL RGRARLCPESGDSSRPPPPPVVSSFAVSGTVRRLQGVLGGTGDSLGVSRSCLRGLGLF QGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRLGPGSGPLGEPLADGLALVPAT LAFNLGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGPPFARELHIEIVSSPHYSTN GNYDGVLYRHFQIPRVVQEGDVLCVPTIGQVEILEGSPEKLPRWREMFFKVKKTVGEA PDGPASAYLADTTHTSLYMVGSTLSPVPWLPSEESTLWSSLSPPGLEALVSELCAVLK PRLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVE TKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPP LMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLA RRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQA LEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGL LLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPC IIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDP ALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADL YSLCSDAMTAALKRRVHDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKR IQRKFAAC" BASE COUNT 605 a 978 c 1059 g 665 t ORIGIN 1 ttggtgtcct gtcaccatgg cgctggctgt cttgcgggtc ctggagccct ttccgaccga 61 gacacccccg ttggcagtgc tgctgccacc cgggggcccg tggccggcgg cggagctggg 121 cctggtgctg gccctgaggc ctgcagggga gagcccggca gggccggcgc tgctggtggc 181 agccctggag gggccggacg cgggcaccga agagcagggt cccgggccgc cgcagctact 241 ggttagccgc gcgctgctgc ggctcctggc actgggctcc ggggcctggg tgcgggcgcg 301 ggcggtgcgg cggcccccgg cgctaggttg ggcactgctt ggcacctcgc tggggcctgg 361 gctcggaccg cgagtcgggc cgctgctggt gaggcgcgga gagaccctcc cagtgcccgg 421 accgcgggtg ctggagacgc ggccggcgtt gcaagggctg ctgggcccag ggactcggct 481 ggctgtgact gagctccgcg ggcgggccag actgtgtcca gagtctgggg acagcagtcg 541 gcccccaccc ccgcccgtgg tgtcctcctt tgcggtttct ggcacagtgc ggcgactcca 601 gggagttctg ggagggactg gagattcact aggggtgagc cggagctgtc tccgtggcct 661 tggcctcttc cagggcgaat gggtgtgggt ggcccaggcc agagagtcat cgaacacttc 721 acagccgcac ttggctaggg tgcaggtcct agaacctcgc tgggacctct ctgatagact 781 gggacccggc tctggaccgc tgggagagcc cctcgctgac ggactggcgc ttgtccctgc 841 cactttggct tttaatcttg gctgtgaccc cctggaaatg ggagagctca gaattcagag 901 gtacttggaa ggctccatcg cccctgaaga caaaggaagc tgctcattgc tgcctgggcc 961 tccatttgcc agagagttac acatcgaaat tgtgtcttct ccccactaca gcactaatgg 1021 aaattatgac ggtgttcttt accggcactt tcagataccc agggtagtcc aggaagggga 1081 tgttctatgt gtgccaacaa ttgggcaagt agagatcctg gaaggaagtc cagagaaact 1141 gcccaggtgg cgggaaatgt tttttaaagt gaagaaaaca gttggggaag ctccagatgg 1201 accagccagt gcctacttgg ccgacaccac ccatacctcc ttgtacatgg tgggttctac 1261 cctgagccct gttccatggc tcccttcaga ggaatccact ctctggagca gtttgtctcc 1321 tccaggcctg gaggccttgg tgtctgaact ctgtgctgtc ctgaagcctc gcctccagcc 1381 agggggtgcc ctgctgacag gaactagcag tgtccttcta cggggccccc caggctgtgg 1441 gaagaccaca gtagttgctg ctgcctgtag tcaccttggg ctccacttac tgaaggtgcc 1501 ctgctccagc ctctgtgcag aaagtagtgg ggctgtggag acaaaactgc aggccatctt 1561 ctcccgggcc cgccgttgcc ggcctgcagt cctgttgctc acagctgtgg accttctggg 1621 ccgggaccgt gatgggctgg gtgaggatgc ccgtgtgatg gctgtgctgc gtcacctcct 1681 cctcaatgag gaccccctca acagctgccc tcccctcatg gttgtggcca ccacaagccg 1741 ggcccaggac ctgcctgctg atgtgcagac agcatttcct catgagctcg aggtgcctgc 1801 tctgtcagag gggcagcggc tcagcatcct gcgggccctc actgcccacc ttcccctggg 1861 ccaggaggtg aacttggcac agctagcacg gcggtgtgca ggctttgtgg taggggatct 1921 ctatgccctt ctgacccaca gcagccgggc agcctgcacc aggatcaaga actcaggttt 1981 ggcaggtggc ttgactgagg aggatgaggg ggagctgtgt gctgccggct ttcctctcct 2041 ggctgaggac tttgggcagg cactggagca actgcagaca gctcactccc aggccgttgg 2101 agcccccaag atcccctcag tgtcctggca tgatgtgggt gggctgcagg aggtgaagaa 2161 ggagatcctg gagaccattc agctccccct ggagcaccct gagctactga gcctgggcct 2221 gagacgctca ggccttctgc tccatgggcc ccctggcacc ggcaagaccc ttctggccaa 2281 ggcagtagcc actgagtgca gccttacctt cctcagcgtg aaggggccag agctcattaa 2341 catgtatgtg ggccaaagtg aggagaatgt gcgggaagta tttgccaggg ccagggctgc 2401 agctccatgc attatcttct ttgatgaact ggactctttg gccccaagcc gggggcgaag 2461 tggagattct ggaggagtga tggacagggt ggtgtctcag ctccttgccg agctagatgg 2521 gctgcacagc actcaggatg tgtttgtgat tggagccacc aacagaccag atctcctgga 2581 ccctgccctt ctgcggcctg gcagatttga caagctggtg tttgtggggg caaatgagga 2641 ccgggcctcc cagctacgcg ttctaagtgc catcacacgc aaattcaagc tagagccatc 2701 tgtgagcctg gtaaacgtgc tagattgctg ccctccccag ctgacgggcg cggacctcta 2761 ctctctctgc tctgatgcta tgacagctgc cctcaaacgc agggttcatg acctggagga 2821 agggctggag ccaggtagct cagcactgat gctcaccatg gaggacttgc tgcaggctgc 2881 cgcccggctg caaccctcag tcagtgagca ggagctgctc cggtacaagc gcatccagcg 2941 caagtttgct gcctgctagg agccccccag ggtctgggac cccgctcagc atggctgcag 3001 gtaccttgat agcccacaga gagatctggg aaggaagggc tcctcctcag gctgttgcca 3061 acccacctgg aggccacctc cctccaggag atcccagggt gcaaagtggc attgagacag 3121 cagcaacagc tcaagagata tctcctgcct acttgcccct ccttccaggc cggctctaag 3181 agaaaggccc atctactcag gaagagggcc agggccttgg gttctgggga ttgggccctg 3241 agagggctag ttctgtggct gaaaataaag catgtcctgc cccctaaaaa aaaaaaaaaa 3301 aaaaaaa //