LOCUS BC048307 3657 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens jumonji, AT rich interactive domain 1A, mRNA (cDNA
clone IMAGE:5551045), partial cds.
ACCESSION BC048307
VERSION BC048307.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3657)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3657)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4826967.
FEATURES Location/Qualifiers
source 1..3657
/db_xref="H-InvDB:HIT000098965"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5551045"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>3657
/gene="JARID1A"
/gene_synonym="RBP2"
/db_xref="GeneID:5927"
/db_xref="HGNC:HGNC:9886"
/db_xref="MIM:180202"
CDS 350..>3657
/gene="JARID1A"
/gene_synonym="RBP2"
/codon_start=1
/product="JARID1A protein"
/protein_id="AAH48307.1"
/db_xref="GeneID:5927"
/db_xref="HGNC:HGNC:9886"
/db_xref="MIM:180202"
/translation="MAGVGPGGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAE
KTGICKIRPPKDWQPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQG
STLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKS
HYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRT
RRVKTQSESGDVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFN
MQMRQRKGTLSVNFVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGD
WRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEK
EFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPV
LEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPS
HAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTF
PRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADP
ECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTT
CFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYD
TWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVA
QLLLSKKQKHRQSPDSGRTRTKLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEF
HERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDP
QQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVA
SLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKG
RPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPRTDIGVYGSGKN
RRKKVKELIEKKKK"
BASE COUNT 1020 a 765 c 980 g 892 t
ORIGIN
1 gggcaaggag acaaacagcc acactgtgct gccggggaag agaagaagaa ggaaaggcca
61 gacacacagg cgtcgtgcag ctgcggaagg attccgtttc ctgcaggggg cggagggatt
121 tgacagcacg gtaacttccg gaaaagtcct gaacctcagt ggaaaagcct tgcaagaaac
181 aataacaaac gggaggagga agcgattctg gggtttctgt gttgaacggt tcttgtccgc
241 gaagatgcgc ttcggcctct gtcaggggac ttgaacgggc ttagtgggct tcagccagct
301 tttctccacc ggttccccac ggggaccccc cccccccccg gccgttgcaa tggcgggcgt
361 ggggccgggg ggctacgcgg cggagttcgt gccaccgcca gagtgccccg tctttgagcc
421 gagttgggag gagttcacag atccgctcag ctttatcggc cgcatccggc ctttggcgga
481 gaaaaccggc atctgcaaaa ttcggccgcc caaggactgg cagcctccat ttgcctgtga
541 agtaaaaagc tttcgtttca ctccaagagt ccagcgcctg aatgaacttg aggcaatgac
601 cagagtgaga ttggatttct tggatcaact agcaaaattt tgggaacttc aaggatctac
661 tctgaagatc cctgtggtag agagaaaaat cctggatctg tatgctttga gcaagattgt
721 tgccagcaaa ggaggttttg aaatggtcac caaagagaag aaatggtcta aagtgggtag
781 tcgcttggga tatctgccag gaaaaggaac tgggtctctt ttgaagtcac attatgaaag
841 aattctctac ccatatgagc ttttccagtc tggtgtgagc cttatgggtg tgcagatgcc
901 taatttagat cttaaagaaa aagtggagcc tgaggttctc agcactgata cccaaacttc
961 cccagagcca ggcacaagga tgaacattct gccgaagaga acaagacgtg tgaagactca
1021 gtcagaatct ggagatgtga gtagaaacac ggaactgaag aaacttcaga tttttggggc
1081 tgggcccaag gttgtgggct tggcaatggg aacaaaagat aaagaagatg aggtcacccg
1141 aagacgaaaa gttaccaaca ggtcagacgc atttaacatg caaatgagac aacggaaagg
1201 cactctctct gttaactttg ttgatctcta tgtttgtatg ttttgtggtc ggggaaacaa
1261 tgaagataaa ttgcttttgt gtgatggatg tgatgacagc tatcatacat tttgtctaat
1321 tcctccacta cctgatgtgc ccaaaggaga ctggaggtgt cctaaatgtg tcgccgagga
1381 atgtagcaaa cctcgagaag cctttggatt tgaacaagct gtacgagagt atacacttca
1441 gagctttgga gagatggcag ataattttaa gtctgattat tttaatatgc cagtccatat
1501 ggttcccaca gaactagtag aaaaggaatt ttggcggctg gtaagcagca ttgaagaaga
1561 tgttattgtg gaatatggag cagatatctc ctcaaaagac tttggaagtg gatttccggt
1621 gaaggatggg cggagaaaga ttctgccaga agaagaggaa tatgcacttt ctggttggaa
1681 tttgaataac atgcctgtcc tggaacagtc tgttcttgca catattaatg tggacatctc
1741 tggtatgaaa gtgccgtggc tctatgtggg aatgtgcttc tcttcttttt gctggcacat
1801 tgaggatcac tggagttatt ccatcaacta cttgcactgg ggggagccaa agacatggta
1861 tggtgtgcca tctcatgctg cagagcaact ggaggaggtg atgagagagc tggcccccga
1921 gttatttgaa tcccagcctg atcttctgca tcagttagtt accatcatga accccaacgt
1981 gctaatggag catggtgtgc ctgtgtacag gaccaatcag tgtgctggcg agtttgttgt
2041 gacatttcct cgtgcctatc actctggatt taaccagggc tacaactttg ctgaagctgt
2101 gaacttctgt actgctgact ggttgcccat tggacgtcaa tgtgtaaatc attaccgacg
2161 cctaaggcgc cactgtgtct tttcacacga ggaactaatt ttcaagatgg cagcagatcc
2221 agaatgctta gatgtggggc tggctgccat ggtctgcaaa gaattgactc tcatgactga
2281 agaagaaaca cgattaagag agtctgttgt acagatgggt gtcctgatgt cagaagaaga
2341 agtgtttgaa cttgttcctg atgatgagcg gcagtgttca gcatgcagaa ccacatgttt
2401 tctctctgct ctcacatgtt cctgtaatcc tgagcggctt gtatgtctct accatccaac
2461 tgatctgtgc ccctgcccca tgcagaagaa atgtcttaga tatcgctacc cattagaaga
2521 cctcccttct ctgctatatg gtgtaaaagt cagggcacag tcctatgaca cttgggtcag
2581 tcgtgttaca gaagcattgt ctgctaactt caaccacaaa aaagatttga ttgaattgcg
2641 agtaatgctg gaagatgctg aggataggaa atacccagag aatgatctct ttcgaaaact
2701 cagggatgct gtaaaagaag ctgagacctg tgcttctgtg gctcagctgc ttctgagcaa
2761 aaagcagaaa cacagacaga gcccagatag tgggaggact cggaccaaac tgacagtgga
2821 agaattgaag gcctttgtcc aacaactttt tagtcttccg tgtgtcatca gccaagctcg
2881 gcaagtaaag aatctgctag atgatgtgga agagtttcat gaacgtgctc aggaggccat
2941 gatggatgaa accccagatt cttccaaact ccagatgttg atagatatgg gctctagtct
3001 ctatgtggaa ctccctgaat taccacgact gaagcaagag ctacaacagg ctcggtggtt
3061 ggacgaagta agactgacct tatcagatcc gcaacaagtc actttggatg tcatgaagaa
3121 gctgatagac tctggggtag ggttggcacc ccaccatgct gtggagaaag caatggctga
3181 actacaggag ctccttacag tctctgaacg atgggaagaa aaggctaagg tctgcctaca
3241 ggcaagaccg aggcacagtg tggcaagttt agaaagcatt gtgaatgaag ccaagaacat
3301 tccagccttt ctacccaatg tgttgtcctt gaaagaagcc ttacaaaagg ctcgagaatg
3361 gaccgctaaa gtggaagcta ttcagagtgg cagcaattac gcttatttgg agcagcttga
3421 gagcttgtct gcgaaaggac gccctattcc tgtgcgtctt gaagcactgc cgcaagtgga
3481 atcacaggta gcagcagcac gggcatggag agaacggact gggcggacgt ttcttaagaa
3541 gaattctagc catacattgt tacaggtgct gagcccccgg accgacattg gtgtatatgg
3601 gagtggcaaa aataggagga aaaaagtaaa agaactaata gaaaaaaaaa aaaaaaa
//