LOCUS BC048275 2780 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:54313 IMAGE:5165672), complete cds. ACCESSION BC048275 VERSION BC048275.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2780) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2780) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 93 Row: f Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28195383. FEATURES Location/Qualifiers source 1..2780 /db_xref="H-InvDB:HIT000098944" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:54313 IMAGE:5165672" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2780 /gene="NPTX2" /gene_synonym="NARP" /gene_synonym="NP-II" /gene_synonym="NP2" /db_xref="GeneID:4885" /db_xref="HGNC:HGNC:7953" /db_xref="MIM:600750" CDS 136..1431 /gene="NPTX2" /gene_synonym="NARP" /gene_synonym="NP-II" /gene_synonym="NP2" /codon_start=1 /product="neuronal pentraxin II" /protein_id="AAH48275.2" /db_xref="GeneID:4885" /db_xref="HGNC:HGNC:7953" /db_xref="MIM:600750" /translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL" BASE COUNT 651 a 784 c 790 g 555 t ORIGIN 1 gagacttctg ccccgcggtg cacgcgaccc tcgagacgac agcgcggcta ctgccagcag 61 cgaaggcgcc tcccgcggag cgcccagacg gcgcccgctc gcccatgccg agctgagcgc 121 ggcagcggcg gcgggatgct ggcgctgctg gccgccagcg tggcgctcgc cgtggccgct 181 ggggcccagg acagcccggc gcccggtagc cgcttcgtgt gcacggcact gcccccagag 241 gcggtgcacg ccggctgccc gctgcccgcg atgcccatgc agggcggcgc gcagagtccc 301 gaggaggagc tgagggccgc ggtgctgcag ctgcgcgaga ccgtcgtgca gcagaaggag 361 acgctgggcg cgcagcgcga ggccatccgc gagctcacgg gcaagctagc gcgctgcgag 421 gggctggcgg gcggcaaggc gcgcggcgcg ggggccacgg gcaaggacac tatgggcgac 481 ctgccgcggg accccggcca cgtcgtggag cagctcagcc gctcgctgca gaccctcaag 541 gaccgcctgg agagcctcga gcaccagctc agagcaaacg tgtccaatgc tgggctgccc 601 ggcgacttcc gcgaggtgct ccagcagcgg ctgggggagc tggagaggca gcttctgcgc 661 aaggtggcag agctggagga cgagaagtcc ctgctgcaca atgagacctc ggctcaccgg 721 cagaagaccg agagcaccct gaacgcgctg ctgcagaggg tcaccgagct ggagcgaggc 781 aatagcgcct ttaagtcacc agatgcgttc aaggtgtccc tcccactccg cacaaactac 841 ctatacggca agatcaagaa gacgctgcct gagctgtacg ccttcaccat ctgcctgtgg 901 ctgcggtcca gcgcctcacc aggcattggc acccccttct cctatgcggt gccagggcag 961 gccaacgaga tcgtgctgat cgagtggggc aacaacccca tcgagctgct catcaacgac 1021 aaggttgcgc agctgcccct gtttgtcagt gacggcaagt ggcaccacat ctgtgtcacc 1081 tggacgacac gggatggcat gtgggaggca ttccaggacg gagagaagct gggcactggg 1141 gagaacctgg ccccctggca ccccatcaag cccgggggcg tgctgatcct tggacaagag 1201 caggacaccg tggggggtag gtttgatgcc actcaggcat ttgtcgggga gctcagccag 1261 ttcaacatat gggaccgcgt ccttcgcgca caagaaattg tcaacatcgc caactgctcc 1321 acaaacatgc cgggcaacat catcccgtgg gtggacaata acgtcgatgt gttcggaggg 1381 gcctccaagt ggcccgtgga gacgtgtgag gagcgtctcc ttgacttgta gccgccttct 1441 cctctgtcca ggaggccggg atcaggctgt tgccatggaa gttcagggcc atagactgcc 1501 ccacttaaac tcttgtcagt ctgggctcag ggttcccaga gctcattccc caggaatctc 1561 taagaccagg gctggggcag tgtctgtcac tggcttgttt gttccctacc aatattctgt 1621 tgctgtttga agtagtgcca gggtcccctg ggaagatgcc cccaagacac ctgccccaag 1681 tgggtggata tctgccttcc tgctgcaagt ggaggcaggt ccagcagccc ctcttcagag 1741 cccctgtaaa tgctatcgca gcctgagtcc tgccgccttc cagttccttg gtgtcccgtg 1801 caccccttct gtctgtcccc tttcatggct gtgcagccgt cccgctggag tggccatgtc 1861 ccttgtgcat tgagtgcatc cccgctggtg actaagctcg cagcaagcgg ctaccccccg 1921 atctgcaaaa gggcctctcc ctttgtgttc tatacattgt gaatcttccc gtctgaagaa 1981 cgcccagcct gcccagacaa agccccgcct tccccaaagc agaggggctg tctgtgtctc 2041 cagaaagggg acatcggggg ggaggggggc tcagaaagga gaagggctgt gatctccggt 2101 cccttccccc atcatccttc cttagactga tgctttgact gaatcatcac tagctatggc 2161 attaaaaggc ctctcttctc atctggtgcc aaaggttccg ttgcagcttt ttacaaccat 2221 ccggtgtggt ttggaggttt tgtttttttt ttttcccaac agaaaagaac agccattaga 2281 agaaggctcc cattttctga tgttccgccc cactgtgaag agtgtgctcg ttttaaattc 2341 atgttgattc ttgtaagcac tggactgtct tcatcaagta tttccctaca gaactcctca 2401 agaaaacaga gatcatttgg ctagagattg tctgagtgac tccaagctac tcactgtatt 2461 ggacgggagt agtaatttat tttaaagata aagtgactaa gtggggaaat ttataaagct 2521 aaatattata tattttattt ttcatacatg tttgaagtgc aaatctgtgg atattccatt 2581 tgtaggacca agtcgacatg cccatcctga cattgtatgc tacgagaact cttctgatga 2641 tggaatttcg attaaagtgc actgaaagat gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2761 aaaaaaaaaa aaaaaaaaaa //