LOCUS BC048217 2243 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens spermatogenesis associated 5, mRNA (cDNA clone
MGC:47791 IMAGE:6052305), complete cds.
ACCESSION BC048217
VERSION BC048217.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2243)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2243)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: o Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2243
/db_xref="H-InvDB:HIT000053308"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47791 IMAGE:6052305"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2243
/gene="SPATA5"
/gene_synonym="SPAF"
/db_xref="GeneID:166378"
CDS 17..2104
/gene="SPATA5"
/gene_synonym="SPAF"
/codon_start=1
/product="SPATA5 protein"
/protein_id="AAH48217.1"
/db_xref="GeneID:166378"
/translation="MSSKKNRKRLNQSAENGSSLPSAASSCAEARAPSAGSDFAATSG
TLTVTNLLEKDDKIPKTFQNSLIHLGLNTMKSANICIGRPVLLTSLNGKQEVYTAWPM
AGFPGGKVGLSEMAQKNVGVRPGDAIQVQPLVGAVLQAEEMDVALSDKDMEINEEELT
GCILRKLDGKIVLPGNFLYCTFYGRPYKLQVLRVKGADGMILGGPQSDSDTDAQRMAF
EQSSMETSSLELSLQLSQLDLEDTQIPTSRSTPYKPIDDRITNKASDVLLDVTQSPGD
GSGLMLEEVTGLKCNFESAREGNEQLTEEERLLKFSIGAKCNTDTFYFISSTTRVNFT
EIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLY
GPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIF
IDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAAL
RRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVL
CNEAGLCALRRILKKQPNLPDVKVAGLVKITLKDFLQAMNDIRPSAMREIAIDVPNVS
WSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALAN
ESGLNFLAIKVGC"
misc_feature 1178..1744
/gene="SPATA5"
/gene_synonym="SPAF"
/note="AAA; Region: ATPase family associated with various
cellular activities (AAA). AAA family proteins often
perform chaperone-like functions that assist in the
assembly, operation, or disassembly of protein complexes"
/db_xref="CDD:pfam00004"
misc_feature 2000..2092
/gene="SPATA5"
/gene_synonym="SPAF"
/note="AAA; Region: ATPase family associated with various
cellular activities (AAA). AAA family proteins often
perform chaperone-like functions that assist in the
assembly, operation, or disassembly of protein complexes"
/db_xref="CDD:pfam00004"
BASE COUNT 702 a 433 c 541 g 567 t
ORIGIN
1 agggtacctt gtgaccatgt cttccaagaa gaatagaaag cggttgaacc aaagcgcgga
61 aaatggttcg tccttgccct ctgctgcttc ctcttgtgcg gaggcacggg ctccttctgc
121 tggatcagac ttcgcggcaa cctccgggac tctgacggtg accaacttat tagaaaagga
181 tgacaaaatt cctaaaacat tccagaattc ccttattcat cttggactca acactatgaa
241 gtctgcaaat atatgtatag gtcgaccagt gttgcttact agtttgaacg gaaagcaaga
301 ggtgtataca gcctggccta tggcaggatt tcctggaggc aaggtcggcc tgagtgaaat
361 ggcacagaaa aatgtgggtg tgaggcctgg tgatgccatc caggtccagc ctcttgtggg
421 tgctgtgcta caggctgagg aaatggatgt ggcactgagt gacaaagata tggaaattaa
481 tgaagaagaa ctgactggtt gtatcctgag aaaactagat ggcaagattg ttttaccagg
541 caactttctg tattgtacat tctatggacg accgtacaag ctgcaagtat tgcgagtgaa
601 aggggcagat ggcatgatat tgggagggcc tcagagtgac tctgacactg atgcccaaag
661 aatggccttt gaacagtcca gcatggaaac cagtagcctg gagttatcct tacagctaag
721 ccagttagat ctggaggata cccagatccc aacatcaaga agtactcctt ataaaccaat
781 tgatgacaga attacaaata aagccagtga tgttttgctt gatgttacac agagccctgg
841 agatggcagt ggacttatgc tagaggaagt cacaggtctt aaatgtaatt ttgaatctgc
901 cagagaagga aatgagcaac ttactgaaga agagagactg ctaaagttca gcataggagc
961 aaagtgcaat actgatactt tttattttat ttcttcaaca acaagagtca attttacaga
1021 gattgataaa aattcaaaag agcaagacaa ccaattcaaa gtaacttatg acatgatagg
1081 aggattaagt agccagctga aagcaattag agaaataatt gaattgcccc tcaaacagcc
1141 tgagcttttc aagagttatg gaattcctgc ccctagagga gtgttacttt atggtcctcc
1201 aggtactgga aaaacaatga tcgccagggc tgttgctaat gaagttggag cctatgtttc
1261 tgtaattaat ggtcctgaaa ttataagcaa attctatggt gagactgaag caaagttacg
1321 tcagatattt gctgaagcca ctctacgaca cccatcaatt atttttattg atgagctgga
1381 tgcactttgt ccgaaaagag agggggccca gaatgaagtg gaaaaaagag ttgtggcttc
1441 actcttaaca ctgatggatg gcattggttc agaagtaagt gaaggacaag tgttggttct
1501 tggggccaca aatcgccctc atgccttgga tgctgctctc cgaagacctg ggcgatttga
1561 taaagagatt gagattggag ttcccaatgc tcaggaccgg ctagatattc tccagaaact
1621 gcttcgaagg gtaccccatt tgctcactga ggctgagctg ctgcagctgg caaatagtgc
1681 tcatggatac gttggagcag acttgaaagt cttgtgtaat gaagcaggtc tctgtgcctt
1741 gcggagaatc ctgaaaaaac agcctaacct ccctgatgtc aaggtggctg gactggtgaa
1801 gattactctg aaggatttct tgcaggcaat gaatgatatc agacccagtg ccatgaggga
1861 aatagcaatt gatgtcccaa atgtatcctg gtcagatata ggaggactgg aaagtatcaa
1921 actgaagttg gaacaggctg tggaatggcc cttaaaacat ccagagtctt tcattcgaat
1981 gggtattcag ccacctaaag gagttcttct ctatgggcca cctgggtgct ctaaaacaat
2041 gatagcaaag gctttggcca atgagagtgg actgaatttt ctagctataa aggtaggatg
2101 ttaaattttt taatcgctac tctctcttgg cctcccccaa cccccattct ctgactccta
2161 cctttaggag aacgaataaa ggcatcttaa ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaa
//