LOCUS BC048129 2221 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone
IMAGE:5273411), partial cds.
ACCESSION BC048129
VERSION BC048129.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2221)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2221)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: l Column: 7.
FEATURES Location/Qualifiers
source 1..2221
/db_xref="H-InvDB:HIT000098896"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5273411"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..2221
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="IMGT/GENE-DB:17102"
/db_xref="MIM:601155"
CDS <1..1582
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/codon_start=2
/product="HMHA1 protein"
/protein_id="AAH48129.1"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="IMGT/GENE-DB:17102"
/db_xref="MIM:601155"
/translation="GRGHQVHKSWPLSISDSDSGLDPGPGAGDFKKFERTSSSGTMSS
TEELVDPDGGAGASAFEQADLNGMTPELPVAVPSGPFRHEGLSKAARTHRLRKLRTPA
KCRECNSYVYFQGAECEECCLACHKKCLETLAIQCGHKKLQGRLQLFGQDFSHAARSA
PDGVPFIVKKCVCEIERRALRTKGIYRVNGVKTRVEKLCQAFENGKELVELSQASPHD
ISNVLKLYLRQLPEPLISFRLYHELVGLAKDSLKAEAEAKAASRGRQDGSESEAVAVA
LAGRLRELLRDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPTLLRPRPT
EATVSLSSLVDYPHQARVIETLIVHYGLVFEEEPEETPGGQDESSNQRAEVVVQVPYL
EAGEAVVYPLQEAAADGCRESRVVSNDSDSDLEEASELLSSSEASALGHLSFLEQQQS
EASLEVASGSHSGSEEQLEATAREDGDGDEDGPAQQLSGFNTNQSNNVLQAPLPPMRL
RGGRMTLGSCRERQPEFV"
BASE COUNT 409 a 701 c 744 g 367 t
ORIGIN
1 agggcgagga caccaggttc acaagtcatg gccgctctcg atctcagact cggacagtgg
61 gctggacccc ggccctggcg caggggactt taagaagttc gagcggacgt catccagtgg
121 taccatgtcg tccacggagg agctggtgga cccagacggt ggagccgggg cttcagcctt
181 tgagcaggct gacctcaacg gcatgacccc cgagctgccg gtggccgtgc ccagtggacc
241 gttccgccac gaggggctgt ccaaggcggc ccgtactcac cggctccgga agctccgcac
301 gcccgccaag tgccgcgagt gcaacagcta cgtctacttc cagggtgctg agtgtgaaga
361 gtgctgcctg gcctgccaca agaaatgtct ggagacgctg gccatacagt gcgggcacaa
421 gaagctgcaa ggccgcctgc agctgttcgg ccaggacttc agccacgcgg cccgcagcgc
481 ccccgacggc gtgcccttca tcgtcaagaa gtgcgtctgc gagatcgagc ggcgggcgct
541 gcgcaccaag ggcatctacc gggtcaatgg ggtaaagaca cgcgtggaga agctgtgcca
601 ggccttcgag aacggcaagg agctggtcga gctgtcgcag gcctcgcccc acgacatcag
661 caacgtcctc aagctctacc tgcgtcagct tcccgagccg ctcatctcct tccgcctcta
721 ccacgagctc gtagggctgg ccaaggacag cctgaaggca gaggccgagg ccaaggcggc
781 gtcccggggc cggcaggacg gctcggagag cgaggcagtg gcggtggccc tggcaggtcg
841 gctgcgggag ctcctgcggg acctgccgcc tgagaaccgg gcctcgctgc agtacctgct
901 gcgtcaccta cgcaggatcg tggaggtgga gcaggacaac aagatgaccc ccgggaacct
961 gggcatcgtg ttcgggccca cgctgcttcg gccacggccc accgaggcca ccgtgtccct
1021 ctcctccctg gtggattatc cccatcaggc ccgcgtcatc gagactctca tcgtccacta
1081 cggcctggtc ttcgaggagg agccggagga gacccccggg ggccaggacg agtcatccaa
1141 ccagcgagct gaggtagtcg tccaggtgcc gtacctggag gcgggcgagg cggtggtcta
1201 cccgctgcag gaggcggcgg cggacgggtg cagagaatcc cgagttgtgt ccaacgattc
1261 ggactcggac ctagaggagg cctccgagct gctgtcctca tcggaggcca gtgccctggg
1321 ccacctcagc ttcctggagc agcagcagag cgaggccagc ctagaggtgg cttctggcag
1381 ccacagcggc agtgaggagc agctggaggc cacagcccgg gaggacgggg acggggacga
1441 ggacggcccg gcccagcagc tctcaggatt caacaccaac cagtccaaca acgtgctgca
1501 ggccccactg ccccccatga ggctccgtgg cgggcggatg acactgggct cctgcaggga
1561 aaggcagccg gaattcgtgt gagctggggt ggggctggga ccacaggtgg cttctctctt
1621 gcctgctcct gtccctccag cacgtcccct gcaccacggc atagcttagg tgcgccgtcc
1681 tggggtcgct gccgagagcg cctggacttc gacgtcccac cagcgggcgc ctcctcccag
1741 aggcttccag gagcacgagg gccttgcggc acaggactgt gccctgtgct gtcccctgca
1801 ccccggctca gctgagctgg ggaacactgc tgtcgtgtga agtcacagtg gccttgttgg
1861 tgcccacagg gctgtgtgga tggaggaagc tgtccctgcc cagtgcatcc cccaggtcat
1921 cacggggacg caggaggcag gccctgccct gccctctcct cacaggtctg ttgcagggac
1981 tccagaaacc attctgggag ccgtggatgg gggcggagct ggggtttggt gcagtttcca
2041 gggtgcagta cagcagggcc tgaatactgg ccctggactc ccttttccag aacaccaggt
2101 gtggccacct ggggctcagg tacacagtgg ggtctctcgg aagccaccgt gtggttcttt
2161 cacaggcacg ttttattttg ctgaaataaa aagtttttaa tcgggaaaaa aaaaaaaaaa
2221 a
//