LOCUS BC048097 1142 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens frataxin, mRNA (cDNA clone MGC:57199 IMAGE:5300379), complete cds. ACCESSION BC048097 VERSION BC048097.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1142) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1142) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 106 Row: p Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31742515. FEATURES Location/Qualifiers source 1..1142 /db_xref="H-InvDB:HIT000053290" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:57199 IMAGE:5300379" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1142 /gene="FXN" /gene_synonym="FA" /gene_synonym="FARR" /gene_synonym="MGC57199" /gene_synonym="X25" /db_xref="GeneID:2395" /db_xref="HGNC:HGNC:3951" /db_xref="MIM:606829" CDS 32..664 /gene="FXN" /gene_synonym="FA" /gene_synonym="FARR" /gene_synonym="MGC57199" /gene_synonym="X25" /codon_start=1 /product="frataxin" /protein_id="AAH48097.1" /db_xref="GeneID:2395" /db_xref="HGNC:HGNC:3951" /db_xref="MIM:606829" /translation="MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRT DIDATCTPRRASSNQRGLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEET LDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPS SGPKRYDWTGKNWVYSHDGVSLHELLAAELTKALKTKLDLSSLAYSGKDA" BASE COUNT 301 a 284 c 267 g 290 t ORIGIN 1 agggcggagc gggcggcaga cccggagcag catgtggact ctcgggcgcc gcgcagtagc 61 cggcctcctg gcgtcaccca gcccggccca ggcccagacc ctcacccggg tcccgcggcc 121 ggcagagttg gccccactct gcggccgccg tggcctgcgc accgacatcg atgcgacctg 181 cacgccccgc cgcgcaagtt cgaaccaacg tggcctcaac cagatttgga atgtcaaaaa 241 gcagagtgtc tatttgatga atttgaggaa atctggaact ttgggccacc caggctctct 301 agatgagacc acctatgaaa gactagcaga ggaaacgctg gactctttag cagagttttt 361 tgaagacctt gcagacaagc catacacgtt tgaggactat gatgtctcct ttgggagtgg 421 tgtcttaact gtcaaactgg gtggagatct aggaacctat gtgatcaaca agcagacgcc 481 aaacaagcaa atctggctat cttctccatc cagtggacct aagcgttatg actggactgg 541 gaaaaactgg gtgtactccc acgacggcgt gtccctccat gagctgctgg ccgcagagct 601 cactaaagcc ttaaaaacca aactggactt gtcttccttg gcctattccg gaaaagatgc 661 ttgatgccca gccccgtttt aaggacatta aaagctatca ggccaagacc ccagcttcat 721 tatgcagctg aggtctgttt tttgttgttg ttgttgttta ttttttttat tcctgctttt 781 gaggacagtt gggctatgtg tcacagctct gtagaaagaa tgtgttgcct cctaccttgc 841 ccccaagttc tgatttttaa tttctatgga agattttttg gattgtcgga tttcctccct 901 cacatgatac cccttatctt ttataatgtc ttatgcctat acctgaatat aacaaccttt 961 aaaaaagcaa aataataaga aggaaaaatt ccaggaggga aaatgaattg tcttcactct 1021 tcattctttg aaggatttac tgcaagaagt acatgaagag cagctggtca acctgctcac 1081 tgttctatct ccaaatgaga cacattaaag ggtagcctac aaatgtaaaa aaaaaaaaaa 1141 aa //