LOCUS BC047879 2829 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone
MGC:57602 IMAGE:5541019), complete cds.
ACCESSION BC047879
VERSION BC047879.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2829)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2829)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC047879.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56550032.
FEATURES Location/Qualifiers
source 1..2829
/db_xref="H-InvDB:HIT000053265"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57602 IMAGE:5541019"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2829
/gene="SHQ1"
/gene_synonym="FLJ10539"
/db_xref="GeneID:55164"
/db_xref="HGNC:HGNC:25543"
CDS 59..1792
/gene="SHQ1"
/gene_synonym="FLJ10539"
/codon_start=1
/product="SHQ1 homolog (S. cerevisiae)"
/protein_id="AAH47879.1"
/db_xref="GeneID:55164"
/db_xref="HGNC:HGNC:25543"
/translation="MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKP
YFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRT
AKPLVEEIGASEIPEEVVDDEEFDWEIEQTPCEEVSEIALNPQCHYGFGNLRSGVLQR
LQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPW
WTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLI
DILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLY
RHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQK
VKSKKLAALAEALKEVSLTKAQLGLELEELEAAALLVQEEETALKAAHSVSGQQTLCS
SSEASDSEDSDSSVSSGNEDSGSDSEQDELKDSPSETVSSLQGPFLEESSAFLIVDGG
VRRNTAIQESDASQGKPLASSWPLGVSGPLIEELGEQLKTTVQVSEPKGTTAVNRSNI
QERDGCQTPNN"
BASE COUNT 819 a 560 c 643 g 807 t
ORIGIN
1 ggcgggaacg cggcggcagt gagagcgagc ggcgccggcc cttgcgtccg gtgcggcgat
61 gctgaccccg gcgttcgacc tcagccagga tccggacttc ctgactatcg ccatccgcgt
121 gccctacgcc cgggtctccg agttcgacgt ctacttcgag gggtctgact tcaagttcta
181 cgccaagcca tactttctca gattaaccct tcctggaaga attgtagaaa atggaagtga
241 gcaagggtcc tatgatgcag ataaaggaat ttttaccatt cgcctgccca aagaaacccc
301 tggccagcat tttgaggggc tgaacatgtt aactgctctt ctggcaccaa gaaaatccag
361 gacagcaaaa ccacttgtgg aagaaatagg tgcttctgag attcctgagg aagtagttga
421 cgatgaagag tttgattggg aaattgagca gacaccctgt gaagaggtat cagaaattgc
481 tttgaatccg cagtgccact atggatttgg aaacttacga tcaggagtgt tgcaacggtt
541 acaggatgaa ctgagtgatg ttattgatat taaggatcca gatttcaccc ctgcagctga
601 acgaagacag aagcgcctgg ccgctgagct ggccaagttt gatcctgatc attatctagc
661 tgactttttt gaagatgagg cgattgaaca gattttgaag tataatcctt ggtggactga
721 caaatattca aaaatgatgg cctttttgga aaagagtcag gaacaagaaa atcatgctac
781 attagtgtct ttttctgaag aagagaagta tcagctacga aaatttgtca ataaatctta
841 tctgctggac aagagagcct gtcgtcaagt gtgctacagt ttgattgata tccttctggc
901 atattgctat gaaacccgtg tcactgaagg agagaagaat gttgaatctg catggaatat
961 caggaaactg agtccaacac tatgctggtt tgagacttgg actaacgttc atgatatcat
1021 ggtgtctttt ggaagaaggg tgttgtgtta cccactctat cgccatttca agctggtgat
1081 gaaggcctac agggacacta taaagatatt gcaactgggt aaaagtgcag ttttaaagtg
1141 tctcctggat attcacaaaa tttttcagga aaatgaccca gcgtacatac tgaatgatct
1201 ctacatctca gactactgtg tgtggattca gaaagtcaaa tccaaaaagt tggcagctct
1261 tgcagaagcc ttaaaggaag tctcccttac aaaggcccag ctggggttag aactggaaga
1321 actagaagca gcagcactgc ttgtccagga ggaagaaact gcattaaaag cagcccattc
1381 agtttctggg cagcagacac tttgctccag ctctgaggca agtgattcgg aggactcaga
1441 cagcagcgtg tcatctggaa acgaagactc aggctcagat tcagaacaag atgaactcaa
1501 agatagtcca tctgagacag tcagttcttt gcaaggtccc tttcttgaag aaagcagtgc
1561 ctttcttatt gttgatggtg gagtacgcag aaacacagcc atccaggagt ctgatgccag
1621 tcagggaaag ccacttgcct cttcctggcc tcttggagtg tctgggcctc tgatagagga
1681 gcttggggaa caactgaaga ctacagttca ggtttctgaa cccaagggca ccactgctgt
1741 aaaccgcagc aatattcagg agagagacgg ctgtcagaca ccaaataatt gactcttagg
1801 tggttttatt cattgttgag aaatatggta gattgggttt catttaccga atgagaattc
1861 ttcattttca ctttgtaatt tttcttagta tatagtcagc ccactgtatt tgtgtgttcc
1921 acatctgtgg attcaaccaa ctgcagatca aaaatattga agaaaaaatc gcatctgtac
1981 caaacatgta cagacttttt tcttgttatt attctctaaa taatacagta tgacaactat
2041 ttccacagca tttacattgt attgggtaat ataagtaatc tagtgatgat ttaaactgtg
2101 caggaggatg tgggtaggtt atatgcaaat actgcaccat tttttatcag gggcttgagc
2161 atctgaggat tttagtatcc tcaggagtcc tggaaccaac cccccacaga tacggggaca
2221 actttatgac attgtttttc aaccaatgaa tgtttatacc ttttgttttc cttgccgcga
2281 ctgtgaagat aaagttcaaa agtattttta ccaaagtgta gctaatattt caagctgaaa
2341 ataatagttc tactgcccgt gtctccagaa tgtagagccc atcaatattt ttattttagg
2401 aggtgtactt gacacccaat aaactgcacg tatcaaaagt gtacaatgtg ttggcgtatg
2461 tataccctgc gtaaaactat caccacaact gaagtgagga acggacccat cattcccaag
2521 tgcccttgtg ccctgttatt agtttgcatg tcctagaatt ctatgtaaat tgaatcatac
2581 aatatgtatc ccttttttgg tcaggcatat tttactcagt atagttattt tgagattcat
2641 ccatgtggta gcatgtgtca cgagtttttg tttttatgtt tttcattgct gagtactgct
2701 tcattgaata gatttgttca ttgacctatc gatggacacc tgggttgttt ccagtttggg
2761 gctgttataa ataaagctgt tatgaacatt tgtgtacaag tcaaaaaaaa aaaaaaaaaa
2821 aaaaaaaaa
//