LOCUS BC047682 2421 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 9,
mRNA (cDNA clone MGC:51849 IMAGE:6066186), complete cds.
ACCESSION BC047682
VERSION BC047682.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2421)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2421)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: k Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254927
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2421
/db_xref="H-InvDB:HIT000053199"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51849 IMAGE:6066186"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2421
/gene="SLC39A9"
/db_xref="GeneID:55334"
/db_xref="HGNC:HGNC:20182"
CDS 633..1556
/gene="SLC39A9"
/codon_start=1
/product="SLC39A9 protein"
/protein_id="AAH47682.1"
/db_xref="GeneID:55334"
/db_xref="HGNC:HGNC:20182"
/translation="MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAG
LLCGTALAVIVPEGVHALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHT
QLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAARSSNSKITTTLGLVVHAAADG
VALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAA
PVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGIGHSHKPD
ATGGRGLSRLEVAALVLGCLIPLILSVGHQH"
BASE COUNT 629 a 576 c 590 g 626 t
ORIGIN
1 ccgggtcaag gcccggtcga gtgcagtacc atgggcagca ccgggtatag ggcagagaca
61 gctttgtgtc aactttgctg ctgaacccct aggacccatc gttagagacc tgcaggactc
121 ctttcctcat cccaggctcg gaggagagtt tgctgggact ggtgggctgg tttcctgctc
181 tggggggcgg atcaccttcg gggccgcctc ttggagacag gggcgcctag ggaacgaaca
241 ggttcgcttg agtcacttac ccgccgccgc ctaagacatt gtgccaccct caatccgaca
301 atcgaagaaa tcgatcattc gcacattttc cccattgact tttcccatct ctgttaaccc
361 acgagaatct aatgactggc atctgagaac ccagagcctg ggaccttaga ttgctgtaag
421 ctttctctgg tgctaatatc agcaaaaagg gtctgttgcc gggtacgttc aagaggaagg
481 tgcctcgtga acacatctgc tggtgggaag gcctaaagaa ctggaaagcc cactctcttg
541 gaaccaccac acctgtttaa agaacctaag caccatttaa agccactgga aatttgttgt
601 ctagtggttg tgggtgaata aaggagggca gaatggatga tttcatctcc attagcctgc
661 tgtctctggc tatgttggtg ggatgttacg tggccggaat cattcccttg gctgttaatt
721 tctcagagga acgactgaag ctggtgactg ttttgggtgc tggccttctc tgtggaactg
781 ctctggcagt catcgtgcct gaaggagtac atgcccttta tgaagatatt cttgagggaa
841 aacaccacca agcaagtgaa acacataatg tgattgcatc agacaaagca gcagaaaaat
901 cagttgtcca tgaacatgag cacagccacg accacacaca gctgcatgcc tatattggtg
961 tttccctcgt tctgggcttc gttttcatgt tgctggtgga ccagattggt aactcccatg
1021 tgcattctac tgacgatcca gaagcagcaa ggtctagcaa ttccaaaatc accaccacgc
1081 tgggtctggt tgtccatgct gcagctgatg gtgttgcttt gggagcagca gcatctactt
1141 cacagaccag tgtccagtta attgtgtttg tggcaatcat gctacataag gcaccagctg
1201 cttttggact ggtttccttc ttgatgcatg ctggcttaga gcggaatcga atcagaaagc
1261 acttgctggt ctttgcattg gcagcaccag ttatgtccat ggtgacatac ttaggactga
1321 gtaagagcag taaagaagcc ctttcagagg tgaacgccac gggagtggcc atgcttttct
1381 ctgccgggac atttctttat gttgccacag tacatgtcct ccctgaggtg ggcggaatag
1441 ggcacagcca caagcccgat gccacgggag ggagaggcct cagccgcctg gaagtggcag
1501 ccctggttct gggttgcctc atccctctca tcctgtcagt aggacaccag cattaaatgt
1561 tcaaggtcca gccttggtcc agggccgttt gccatccagt gagaacagcc ggcacgtgac
1621 agctactcac ttcctcagtc tcttgtctca ccttgcgcat ctctacatgt attcctagag
1681 tccagagggg aggattagaa ctaagaggac acaccagcat cggagtgtat taagcccctg
1741 aaacacatgg tagctaggga ctgaacacag gaaccgtatg acagcagcac aaacccccaa
1801 aggatgttcc tgccttgtgg gcccctgagc cccttgggag actgagaatc atgaccagat
1861 tcatccagaa ctgctgcagt gttaagtgaa aatcctctgt agttgttctg cagaggaacc
1921 ttccttccat tagaaaattt ctgctcaata cagaatggtc cacatcaccc aaagtgcact
1981 gttggagatg ctgtgaaatt aaaacctctt tgtacctgag acatctagat tcacctcagg
2041 aggcctgaag gaaatgtgta acttgtggga aagaactaga caaccattta ggaattctct
2101 agatatactc agcctaaccc agtggcttaa cacaaggaga ttggctttga tctttttttc
2161 ttgtggcatc ttccagcaag ttagaagtct catgggataa gactgcagtt cccctggttc
2221 aatagctgga acagtgattt taaatgtccc tttttctgga tcccttgtaa acatgaaatc
2281 attccatgga tggctgcctt ataattttgt ctctttccac tttaattgtg aatggttaaa
2341 aaaatgctgt tttctgatat taaattttta ttagtgcaaa aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa aaaaaaaaaa a
//